Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1767 ATGTCGTTAATATCCTTTCTTGAGCGTGCTTTGATCCGAAGCAAAGTGCACTCTCAACGGCAATGCTTGATTAGTTTGCACTCTTCTGCTTCTTCTGCATTGATGTCGGAAGACCACGTGTTTGATGAAAGTCCAAAAATTGATGCAAATTTTGTGGTTAATAGGCCAGTAACACATGTTTCTGGTACAAGGATGGAGTTGTTTCCCTTAGTGGGTAGGATTTTTAAATCATTGAATTGGAGGGTGGCAAGAGAAATAAGGTTTGGGGGATGTGTTGAGAGTCATGGGTTTTCCCATTCAATTAATTGCTTTAGGATTATTGTTCATACATTTGCTTTGGCGGGGTTGCGTTTGGAAGTGTTTTCTTTGCTTAAGGATGTTGTTGGGTACTGCAATGGGGCCAAGTATGATACGTATGATTTATTTTCAGCTTTTCTGGATTCACCCAATCATGTGGAAAAATTTGTTGTTGTGTTTGATGAACTCATAAAAGTGTTTGCATCCAGTTCTATGCTGGAAAATGCCCTTGATGTGTTTGTGAATGCTAAGCGGATCGGGCTTGAGCCTGATATAAAGGCTTGCAATTTCTTGTTGAAATGCTTAGTTGAAGCAAATAGAGTGGAGTTTGTTAGACGATTTTTTGAGGAATTGAAAGACTGCGGTCCTTCACCTAATATCTACACCTATACAATCATGATGAACTTTTATTGTGGAGATGTTGGGTGCCATGCAAATATGAGAAGGGCTGCTGAGATTTTAGGAAAAATATATCAGAGTGGGGAAAAGCCGACTGTTGTCACTTATGGTACTTATATTTATGGACTTTGTAAAGCTGGTTCCGTTGAGGTTGCTCTAATGTTAATTCGCAACTTGCACTATAAAAACCAGCCTCTCAATAGCCATTGTTTTAATGCTCTTATTTATGGATGTTGCAAAAAAGGTGAAGTACATGAGGCTTTGCAAGTTTTGGAAGAAATGAAGAGCACTGGGACATTACCAGATGTTTATAGCTACAGCATCTTAATTAATGCATTCTGCAAGAATGGGGATGCAATTAAAGGTCTTGACATGATAAAGGAAATGGAACTCTACCAGATAAAACCATCCACTGTCAGCTACACCTCCCTCATCCATTGTCTGTGCAAGAAGAATCTTATGCAAAACGCAGTGGATATATTCCGTAGTATTGGTGCTTCTGGTAATAAATATGATCAGTTTGTTTATGAAATTTTAATTAAAGGATTTTGCATGCAAGGTGATGTGGGTTCGGCCATCAAGCTTTTGGAGGAGATGTTGAACAATAATTTGGTTCCTACTTCTTTTAGTTACCGCAGTCTAATTGGGGGATGCTACAAACTGGGACTCTATGACAAGGCATTGGAAGTTTTTAATATCATGCTACGAGATGGTATCTGGCCAGATACTATTGCTTGCAATTGTATGCTTAATGTATCCTGCAGGGATGATCGCCTCAAAGAAGCCTTGACACTGTTGGAGAACTTCGAAGAACATGGATTTAACCTAAACCAATATTCATATAATGCCATCATCTACAAGCTTTGTAAAGAAAATTATCCAGAAAAAGCATTGGAGGTCTTACCAAGAATGCTTAAAAGGAATGTACTTCCTGGAGTTGTTAATTATAGTACTCTTATATCTGGTTTTGCCAAACAGTTAAATTTTAAAGGTGCTGTGAAGTTATTCACAAGAATGATAAAAGTGGGGAACACTTTCAACACCATCACATATACAATTCTTATTAGCATTTTTAGTCGTAGAGGCAAAATGCATGAAGCATATGCCATTTTTAAGGAAATGAAAAAAAGGGGTTTGTGTCCAGATGAAGTTTCATATACAACTTTAATAGATGGCTTTTGTAAAACTAAAGAAATGAAAAAGGCCTGGGCATTATTTGAAGAAATGTCAAAGGAAGGCTGTTTGCCAAATGCAATTACTTATACTTGTTTGATTCATGGATTTGGCAAGTCAGACCGGATAGATTTGGCTATCTGGCTGTTTGATGAAATGAACAAAGCTGAAATAATTCCTGATGTTGTAACTTACACTGTCCTCATTTTTTGGTACTGGAACCATGGGAACATAGACGAGGCATTTAGGGTATATGATGAAATGAAGGAAAAGGGTGTTTTGCCAGATGATATAGTTCTTAAGATTCTAGGCCTACTCTAG 2190 0.3772 MSLISFLERALIRSKVHSQRQCLISLHSSASSALMSEDHVFDESPKIDANFVVNRPVTHVSGTRMELFPLVGRIFKSLNWRVAREIRFGGCVESHGFSHSINCFRIIVHTFALAGLRLEVFSLLKDVVGYCNGAKYDTYDLFSAFLDSPNHVEKFVVVFDELIKVFASSSMLENALDVFVNAKRIGLEPDIKACNFLLKCLVEANRVEFVRRFFEELKDCGPSPNIYTYTIMMNFYCGDVGCHANMRRAAEILGKIYQSGEKPTVVTYGTYIYGLCKAGSVEVALMLIRNLHYKNQPLNSHCFNALIYGCCKKGEVHEALQVLEEMKSTGTLPDVYSYSILINAFCKNGDAIKGLDMIKEMELYQIKPSTVSYTSLIHCLCKKNLMQNAVDIFRSIGASGNKYDQFVYEILIKGFCMQGDVGSAIKLLEEMLNNNLVPTSFSYRSLIGGCYKLGLYDKALEVFNIMLRDGIWPDTIACNCMLNVSCRDDRLKEALTLLENFEEHGFNLNQYSYNAIIYKLCKENYPEKALEVLPRMLKRNVLPGVVNYSTLISGFAKQLNFKGAVKLFTRMIKVGNTFNTITYTILISIFSRRGKMHEAYAIFKEMKKRGLCPDEVSYTTLIDGFCKTKEMKKAWALFEEMSKEGCLPNAITYTCLIHGFGKSDRIDLAIWLFDEMNKAEIIPDVVTYTVLIFWYWNHGNIDEAFRVYDEMKEKGVLPDDIVLKILGLL* 730
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 299 333 IPR002885 -
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 579 613 IPR002885 -
Apr7g1767 729 Pfam PPR repeat family 404 452 IPR002885 -
Apr7g1767 729 Pfam PPR repeat family 683 721 IPR002885 -
Apr7g1767 729 Pfam PPR repeat family 543 588 IPR002885 -
Apr7g1767 729 Pfam PPR repeat family 189 237 IPR002885 -
Apr7g1767 729 Pfam PPR repeat family 613 661 IPR002885 -
Apr7g1767 729 Pfam PPR repeat family 473 522 IPR002885 -
Apr7g1767 729 Pfam PPR repeat family 299 347 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 548 575 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 371 401 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 616 650 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 581 615 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 302 335 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 336 369 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 651 685 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 441 474 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 686 719 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 511 544 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 407 439 IPR002885 -
Apr7g1767 729 TIGRFAM PPR: pentatricopeptide repeat domain 193 225 IPR002885 -
Apr7g1767 729 Gene3D Tetratricopeptide repeat domain 360 433 IPR011990 GO:0005515
Apr7g1767 729 Gene3D Tetratricopeptide repeat domain 434 504 IPR011990 GO:0005515
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 509 543 IPR002885 -
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 684 718 IPR002885 -
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 614 648 IPR002885 -
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 439 473 IPR002885 -
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 334 368 IPR002885 -
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 649 683 IPR002885 -
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Apr7g1767 729 Gene3D Tetratricopeptide repeat domain 631 728 IPR011990 GO:0005515
Apr7g1767 729 Gene3D Tetratricopeptide repeat domain 515 630 IPR011990 GO:0005515
Apr7g1767 729 Gene3D Tetratricopeptide repeat domain 138 239 IPR011990 GO:0005515
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 404 438 IPR002885 -
Apr7g1767 729 Pfam PPR repeat 366 394 IPR002885 -
Apr7g1767 729 Pfam PPR repeat 260 288 IPR002885 -
Apr7g1767 729 SUPERFAMILY HCP-like 380 607 - -
Apr7g1767 729 Gene3D Tetratricopeptide repeat domain 240 359 IPR011990 GO:0005515
Apr7g1767 729 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 2 724 - -
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Apr7g1767 729 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 724 - -
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 544 578 IPR002885 -
Apr7g1767 729 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 474 508 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1767 388 726 Glycosyltransferase AT1G05670 30.678 2.00e-43 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1767 - - gmx:100818511 1107.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1767 7 24994727 25000197 Apr7g1767 7 24994727 25000197 ECH