Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1710 ATGGCAGTTGCAAGGGATCTAATGGGAAAGAAAAATAGCATCATCTCGGTGATTGGAGATGGAGCAATGACTGCTGGGCAAGCTTATGAGGCTATGAACAATGCAGGGTTCCTTGGTGCTAACATGATAGTTATACTTAATGACAACAGACAAGTCTCATTACCAACTGCTACCATTGACGGCCCTGCAACACCAGTTGGAGCCCTCAGTAGTACTTTAAGCAAAATTCAAGCAAGCACCAAATTCCGCAATCTTAGAGAAGCTGCAAAAGGCATCACAAAGCAAATAGGTGGAAAAACACACCAAGTTGCAGCAAAGGTAGATGAGTATGCAAGAGGTATGATCAGTGGTTCCGGTTCTTCATTTTTTGAGGAGCTTGGCTTATACTGTATCGGACCTGTGGATGGTCACAACATTGAAGATCTCATCACCATTTTTGAAAAGGTGAAAGCAACGCCTGCTCCAGGTCCAATTTTGATTCATGTTGTGACAGAGAAAGGGAAGGGATACCCCCCAGCAGAAGCAGCTGCCGATAGAATGCATGGTGTTGTTAAGTTTGAACCAACAACAGGCCATCAGTTTAAACCAAAATCGTCCACACTTACATACACACAGTACTTTGCTGAGTCATTGATTAAAGAAGCTGAAATAGACAATAAGATAGTAGCCATTCATGCAGCAATGGGCGGCGGGACAGGGCTAAATTATTTCCAAAAAAGGTTTCCAGGTCGCTGTTTTGATGTGGGGATAGCTGAACAACATGCTGTTACATTTGCAGCTGGTTTAGCAGCGGAAGGTCTCAAGCCATTTTGTGCCATCTATTCAACATTTCTGCAACGTGGATATGATCAGGTGGTCCATGATGTAGATCTTCAGAAACTACCTGTTCGATTTGCTATGGATAGAGCTGGTTTGGTTGGAGCAGATGGACCAACCCATTGTGGAGCATTTGATATCACATACATGGCCTGCTTGCCCAATATGGTGGTCATGGCTCCATCTGATGAAGCTGAACTGATGCACATGATTGCAACAGCAGCAGCAATAGATGACAGACCAAGCTGCTTTAGATTTCCAAAAGGCAATGGAATTGGAGCCACTTTACCTCTCAATAACAAAGGAATTCCACTTGAGATAGGAAAGGGCAGAATTCCGATACAAGGCAGCAGAGTTGCTATTTTTGGATATGGTTCTGTAGTTCAACAATGCCTGCAAGCTGCAAAATTGCTCAAACCACTAGATGTTTCTGTTACAGTGGCAGATGCTAGGTTTTGCAAACCTTTGGACACTGATCTCATTAAGCTGTTAGCTAAGGAGCACGAGTTTCTCCTCACAGTGGAAGAGGGTTCTATAGGAGGTTTTGGATCACACGTTTCACATTTCCTAAGCACAGCTGGTATCCTGGATGGACCTTTGAAGTGGAGAGCCATGATGCTTCCTGATAAATACATTGAGCATGGATCACCGCAAGATCAGACAGAAGAAGCAGGACTTTCAGCGAAGAACATTGCTGTAACAGTCTTGTCTCTTCTGAAAAGGCCAAAGGAAGCTCTAATGCTAAAGTAA 1566 0.4374 MAVARDLMGKKNSIISVIGDGAMTAGQAYEAMNNAGFLGANMIVILNDNRQVSLPTATIDGPATPVGALSSTLSKIQASTKFRNLREAAKGITKQIGGKTHQVAAKVDEYARGMISGSGSSFFEELGLYCIGPVDGHNIEDLITIFEKVKATPAPGPILIHVVTEKGKGYPPAEAAADRMHGVVKFEPTTGHQFKPKSSTLTYTQYFAESLIKEAEIDNKIVAIHAAMGGGTGLNYFQKRFPGRCFDVGIAEQHAVTFAAGLAAEGLKPFCAIYSTFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGAFDITYMACLPNMVVMAPSDEAELMHMIATAAAIDDRPSCFRFPKGNGIGATLPLNNKGIPLEIGKGRIPIQGSRVAIFGYGSVVQQCLQAAKLLKPLDVSVTVADARFCKPLDTDLIKLLAKEHEFLLTVEEGSIGGFGSHVSHFLSTAGILDGPLKWRAMMLPDKYIEHGSPQDQTEEAGLSAKNIAVTVLSLLKRPKEALMLK* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1710 521 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 180 362 IPR029061 -
Apr7g1710 521 Pfam Transketolase, pyrimidine binding domain 200 362 IPR005475 -
Apr7g1710 521 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 1 521 IPR005477 GO:0008661|GO:0016114
Apr7g1710 521 SUPERFAMILY TK C-terminal domain-like 375 511 IPR009014 GO:0003824
Apr7g1710 521 SMART Transket_pyr_3 201 366 IPR005475 -
Apr7g1710 521 Gene3D - 1 173 - -
Apr7g1710 521 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 1 164 IPR005477 GO:0008661|GO:0016114
Apr7g1710 521 Pfam Transketolase, C-terminal domain 380 503 IPR033248 -
Apr7g1710 521 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 1 242 IPR029061 -
Apr7g1710 521 TIGRFAM dxs: 1-deoxy-D-xylulose-5-phosphate synthase 1 511 IPR005477 GO:0008661|GO:0016114
Apr7g1710 521 ProSitePatterns Transketolase signature 2. 307 323 IPR020826 -
Apr7g1710 521 Gene3D - 201 368 - -
Apr7g1710 521 CDD TPP_PYR_DXS_TK_like 207 360 - -
Apr7g1710 521 PANTHER 1-DEOXY-D-XYLULOSE-5-PHOSPHATE SYNTHASE 2, CHLOROPLASTIC-RELATED 1 521 - -
Apr7g1710 521 Gene3D - 380 512 IPR009014 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1710 Apr-Chr7 24339522 24341657 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1710 244 459 Acyl Lipid Metabolism Gene Families AT1G55510 24.138 6.60e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1710 K01662 - gmx:100799481 946.806
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1710 7 24339522 24341657 Apr7g1710 7 24339522 24341657 ECH