Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1708 ATGCAAGACCCCACTTCTGTTTCCGAAACTGATCACCACCATCAGCAGCACCATCACCATGAAACTGCGTCGTTCAAGCGCAGCAACCGTTCTAAGCGACCCGTGTTCAAGGTACTCCCCGGTCAGATCGCGTTCCGCTTGGTATGCCACGCGTCCATCGTCGGTGGCTTGATCGGTAGCTCCGGCTCCATCGTGTCTCAGCTCCGGCGGGAAACGGGGTGTAAAATCCACTGCGAGGACTCGGTGCCCAGCATCGAAGACCGGGTCATATTGGTAATCGGGTCGCTTTCGCCCCGAAAAGGACTCGATTTGGGTGATGGGGAGGTTGAGGTTTCGAACGCGCAAGAAGCTGTAGTTAGGGTTTTTGAGAGAGTTTGGGAACTTGAGGCCGAGAAAGGGTTTAACGTTAACAAAGGCGTGAACGGCGAGGTTTTGTGTAAATTGCTTGCGCACACTTCCCAGATTGGTGCCGTTGTAGGCAAAGGAGGGAAGAACATAACCACTATTAGGAACACTAGTGGCGCCAAAATTAGGGTTTGCCCTCCTCCACAATGTGCTTCTAAAGACGAGGAGTTAGTTCAAATAACTGGTGGAATTTTGGCTGCAAAGAAAGCATTAATTGCTGTATCTCATTGTCTTCAAGATTGTCCGCCATTAAGCAAAGTTCCAGTTTCTTTTAGCACACCAACTGTTAGCTCGTCTGATAGGTCCTCCTCTGATCCAAATGCTGAACTATTTCCTCATCTTAATTCATTGTTACCGTCCATGGAGGGTTTATCTATGCATGATGCTCCCAAACAGACAACTAACTCTAATGAAACCTCTAGTCGCGATTCAAAAGGTACAGAACAGCAAGTTGTGTTCAGGATCCTTTGTTCTAATAATGTAGCTGGGAGTGTGATTGGCAAAAGAGGGGCTATAGTCAGAGCTCTGGAAAGTAAAACAGGTGCTTCCATTATCTTTGCAGCTCCTTTAAGTGAGTTTGCAGAGCGCATAGTCACCATTTCTGCTATAGAGAACCTTGAATCTTGTTATTCTCCTGCACAAGATGCTGTTACACTTGTCTTTGCTAGAATTATCGAAGATCAAATTGGAAAGGGTTTTCTCCCAGTATCGAGTATGGAATCACCTGTAACTGCGAGGCTTTTAGTTGCATTAAACACAGTAAATTGCTTGGGTGGCGGTGAAGGTCAGTTGATTTCAGAACTGAGAGAATCAACTGGTGCTGATATACAAATATTGCATGGGGAGCCAGTTCCAAATGGTGCTTCAGATAATGATGTGGTGGTGCAGATTGAACTTAAGAGAGAGAGGGATTTCATGCAGATCACTGGAGGGTACCAATGCGTACAAAATGCCCTATATAAAATCACTTGTAGAATCAGGGATAATCTTCTGCCAAATGAGGTGGTTGCTGAGGCAAGAAAGAAATTCAATTGGAAAGTGAATACGGATCCTGTAAAGGGTAATTCTTTTGGCCGTGGAAGATCTGCTTTTCCTTCTGGGAGGTTTCTGCCGAAGAATGCAGGGGTGCATGCTGAAACAATATCACAAAATGGAGAATCAAATACAGATTTAAGTGAGAATTCGGAACGTGGGAGAGGAAACATGCTTGCTACTGTGACAAATACTACTGTGGAGATTGTAGTTTCTGAACACGTCTTTGGTTCTGTTTATGGTGAAGATGGTGGCAATTTGGATCGAATCAGACAGATTTCAGGGGCAAGTGTAACAGTATACGATCCTTCTGTTGGTACAAGTGGAGGGAAAGTTGTGATATCTGGGACACCAGATCAAACCTTTGCAGCGCAGAGCTTGCTTCAAGCCTTCATTCAAACTGGACAAGTGAGCTGA 1854 0.4536 MQDPTSVSETDHHHQQHHHHETASFKRSNRSKRPVFKVLPGQIAFRLVCHASIVGGLIGSSGSIVSQLRRETGCKIHCEDSVPSIEDRVILVIGSLSPRKGLDLGDGEVEVSNAQEAVVRVFERVWELEAEKGFNVNKGVNGEVLCKLLAHTSQIGAVVGKGGKNITTIRNTSGAKIRVCPPPQCASKDEELVQITGGILAAKKALIAVSHCLQDCPPLSKVPVSFSTPTVSSSDRSSSDPNAELFPHLNSLLPSMEGLSMHDAPKQTTNSNETSSRDSKGTEQQVVFRILCSNNVAGSVIGKRGAIVRALESKTGASIIFAAPLSEFAERIVTISAIENLESCYSPAQDAVTLVFARIIEDQIGKGFLPVSSMESPVTARLLVALNTVNCLGGGEGQLISELRESTGADIQILHGEPVPNGASDNDVVVQIELKRERDFMQITGGYQCVQNALYKITCRIRDNLLPNEVVAEARKKFNWKVNTDPVKGNSFGRGRSAFPSGRFLPKNAGVHAETISQNGESNTDLSENSERGRGNMLATVTNTTVEIVVSEHVFGSVYGEDGGNLDRIRQISGASVTVYDPSVGTSGGKVVISGTPDQTFAAQSLLQAFIQTGQVS* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1708 617 PANTHER RNA-BINDING KH DOMAIN-CONTAINING PROTEIN 23 488 - -
Apr7g1708 617 Gene3D K Homology domain, type 1 540 614 IPR036612 GO:0003723
Apr7g1708 617 CDD PCBP_like_KH 287 356 - -
Apr7g1708 617 MobiDBLite consensus disorder prediction 514 533 - -
Apr7g1708 617 Pfam KH domain 288 337 IPR004088 GO:0003723
Apr7g1708 617 Pfam KH domain 545 608 IPR004088 GO:0003723
Apr7g1708 617 Pfam KH domain 46 95 IPR004088 GO:0003723
Apr7g1708 617 Pfam KH domain 148 207 IPR004088 GO:0003723
Apr7g1708 617 CDD PCBP_like_KH 45 122 - -
Apr7g1708 617 MobiDBLite consensus disorder prediction 1 18 - -
Apr7g1708 617 MobiDBLite consensus disorder prediction 262 280 - -
Apr7g1708 617 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 284 369 IPR036612 GO:0003723
Apr7g1708 617 ProSiteProfiles Type-1 KH domain profile. 543 607 - -
Apr7g1708 617 MobiDBLite consensus disorder prediction 227 245 - -
Apr7g1708 617 CDD PCBP_like_KH 146 210 - -
Apr7g1708 617 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 135 218 IPR036612 GO:0003723
Apr7g1708 617 SMART kh_6 542 612 IPR004087 GO:0003676
Apr7g1708 617 SMART kh_6 41 123 IPR004087 GO:0003676
Apr7g1708 617 SMART kh_6 284 360 IPR004087 GO:0003676
Apr7g1708 617 SMART kh_6 142 214 IPR004087 GO:0003676
Apr7g1708 617 SMART kh_6 376 462 IPR004087 GO:0003676
Apr7g1708 617 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 371 466 IPR036612 GO:0003723
Apr7g1708 617 ProSiteProfiles Type-1 KH domain profile. 143 209 - -
Apr7g1708 617 ProSiteProfiles Type-1 KH domain profile. 42 118 - -
Apr7g1708 617 Gene3D K Homology domain, type 1 283 363 IPR036612 GO:0003723
Apr7g1708 617 Gene3D K Homology domain, type 1 42 127 IPR036612 GO:0003723
Apr7g1708 617 Gene3D K Homology domain, type 1 374 464 IPR036612 GO:0003723
Apr7g1708 617 Gene3D K Homology domain, type 1 140 217 IPR036612 GO:0003723
Apr7g1708 617 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 23 488 - -
Apr7g1708 617 MobiDBLite consensus disorder prediction 257 280 - -
Apr7g1708 617 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 543 612 IPR036612 GO:0003723
Apr7g1708 617 MobiDBLite consensus disorder prediction 227 246 - -
Apr7g1708 617 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 35 96 IPR036612 GO:0003723
Apr7g1708 617 CDD KH-I 545 608 - -
Apr7g1708 617 ProSiteProfiles Type-1 KH domain profile. 285 352 - -
Apr7g1708 617 ProSiteProfiles Type-1 KH domain profile. 377 457 - -
Apr7g1708 617 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1708 Apr-Chr7 24324052 24329796 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1708 K21444 - gmx:100793130 939.488
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1708 7 24324052 24329796 Apr7g1708 7 24324052 24329796 ECH