Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1664 ATGGCAGGAGCAGCCTCTGCTCTGTTCCTTCTCGATATCAAAGGCCGCGTCCTCATCTGGCGCGACTATCGCGGCGATGTCTCCGCTGTCGACGCCGAACGCTTCTTCACCAAACTCATCGAAAAACAGGCACAAGATCCGGTTGTGCACGATAACGGTGTGACATACATGTTCATACAGCACAGCAATGTTTACCTCATGATAGCCACCAGACAAAACTGCAATGCCGCTAGCCTTCTCTTCTTCCTGCATCGGATCGTCGATGTGTTTAAGCATTATTTTGAGGAATTGGAAGAGGAATCGCTTAGGGATAACTTTGTCGTCGTGTATGAACTACTTGATGAAATTATGGACTTTGGTTACCCCCAATATACTGAGGCGAAGATTCTGAGTGAGTTTATCAAGACTGATGCTTATAGAATGGAAGTTACGCAGAGACCTCCCATGGCTGTAACTAATGCTGTGTCGTGGCGCAGCGAAGGGATAAACTACAAGAAAAATGAGGTTTTCTTGGATGTGGTGGAGAGTGTTAATATACTTGTCAATAGCAATGGTCAAATAATTAGATCTGATGTTGTTGGGGCATTGAAGATGAGAACATATTTGAGTGGTATGCCTGAGTGTAAACTTGGCTTAAATGATAGAGTATTATTAGAGGCACAGGGTAGAGCAACAAAGGGAAAGGCCATTGACTTGGAAGACATCAAATTTCATCAGTGTGTGCGATTGGCTCGATTTGAAAATGATCGAACAATTTCCTTTATACCACCTGATGGGTCATTTGACTTGATGACATACAGGCTTAGTACACAGGTTAAGCCATTAATTTGGGTGGAAGCAAATGTTGAAAAGCATTCAAAAAGCCGGATTGAGATTATGGTAAAAGCTAGGAGTCAATTTAAGGAACGTAGCACTGCCACAAATGTTGAGATTGAGTTGCCTGTGCCTGTTGACGCAACCAATCCAAATGTTCGAACTTCAATGGGATCTGCAGCATATGCACCTGAAAAAGATGCATTAATCTGGAAAATTAGATCCTTTCCTGGAGGCAAGGAGTATATGTTAAGAGCAGAGTTTCGTCTTCCCAGTATAACAGCTGAGGAAGCAACTCCTGAGAGAAAAGCTCCTATACGTGTGAAATTTGAGATACCATATTTTACTGTTTCTGGAATACAGGTAAGATATTTGAAGATTATTGAGAAAAGTGGGTATCAGGCTCTACCATGGGTGAGATACATAACAATGGCTGGAGAGTATGAACTAAGACTTATTTAA 1275 0.422 MAGAASALFLLDIKGRVLIWRDYRGDVSAVDAERFFTKLIEKQAQDPVVHDNGVTYMFIQHSNVYLMIATRQNCNAASLLFFLHRIVDVFKHYFEELEEESLRDNFVVVYELLDEIMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGINYKKNEVFLDVVESVNILVNSNGQIIRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRATKGKAIDLEDIKFHQCVRLARFENDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEANVEKHSKSRIEIMVKARSQFKERSTATNVEIELPVPVDATNPNVRTSMGSAAYAPEKDALIWKIRSFPGGKEYMLRAEFRLPSITAEEATPERKAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRLI* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1664 424 Gene3D Mu homology domain, subdomain B 274 422 - -
Apr7g1664 424 Gene3D Mu homology domain, subdomain B 162 418 - -
Apr7g1664 424 ProSitePatterns Clathrin adaptor complexes medium chain signature 2. 252 266 IPR018240 GO:0006886|GO:0016192|GO:0030131
Apr7g1664 424 PANTHER ASSEMBLY PROTEIN AP47, PUTATIVE-RELATED 1 423 - -
Apr7g1664 424 Pfam Adaptor complexes medium subunit family 155 422 IPR028565 -
Apr7g1664 424 PANTHER AP COMPLEX SUBUNIT MU 1 423 - -
Apr7g1664 424 CDD AP-1_Mu1_Cterm 152 422 - -
Apr7g1664 424 SUPERFAMILY SNARE-like 6 137 IPR011012 -
Apr7g1664 424 CDD AP1_Mu_N 6 141 - -
Apr7g1664 424 ProSiteProfiles Mu homology domain (MHD) profile. 166 422 IPR028565 -
Apr7g1664 424 Pfam Clathrin adaptor complex small chain 7 127 IPR022775 -
Apr7g1664 424 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 155 175 IPR018240 GO:0006886|GO:0016192|GO:0030131
Apr7g1664 424 PRINTS Clathrin coat assembly protein signature 15 35 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr7g1664 424 PRINTS Clathrin coat assembly protein signature 99 126 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr7g1664 424 PRINTS Clathrin coat assembly protein signature 157 185 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr7g1664 424 PRINTS Clathrin coat assembly protein signature 232 259 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr7g1664 424 PRINTS Clathrin coat assembly protein signature 301 316 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr7g1664 424 PRINTS Clathrin coat assembly protein signature 341 352 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr7g1664 424 PIRSF AP_complex_mu 143 424 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr7g1664 424 PIRSF AP_complex_mu 4 149 IPR001392 GO:0006886|GO:0016192|GO:0030131
Apr7g1664 424 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 155 422 IPR036168 -
Apr7g1664 424 Gene3D - 5 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1664 Apr-Chr7 23810655 23814632 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1664 K12393 - gmx:100808175 824.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1664 7 23810655 23814632 Apr7g1664 7 23810655 23814632 ECH