Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1628 ATGGCGGATTCCGTCTCTTCTACAGCAACCCTACCACCCAATCCCCAACCCTCCGAATCCGGACCTCCGAACCAACCCGATCCACTTCCCAAATCCTCAACGCCACCACCATCCACTCCCCTCGCCACAAACCCTAATCCCAATCCAACGTTACTACCTCCGCCGCCCACCGTATTATATGCTCCGCCGCAACTTCCCGGCGTTCTCCCTCCGTCCGTGCCGTCATTTCGGCCACTAGCTCCTCAATTCTCTCCCGTCCCGGCGCCAAACCCGGCCTTTCAAAACCCTAATGTTCCACCTCCCGGCGTGGCCAGCGCCGCCGCGGTTCCGGTGCCGCAGATGCAGCCGATGATGTCGTACCAGGTTCCTCCCGGCCAGCCGGCGAACCCGACCCTGCGTCCCTTCGCTCCGATGCCAAACGGTTACGCCGCAGCTCCGCAAGGGACCGTTCCTCCCGCGGGAATTCCTCGTTACCCGCCTCCATATGGAACTATGGTCCGGCCTGTTTATCCTCCACGGCCTCCTGGAGCAATTAATGTACCTCCAATATCACGCCCACCAGTTGCTGGGATCCCTGCAGTTCGCCCTATTATTCCTCCTGTTGTCAGACCTGTGGTTGCCCCCAGTGTTACTCCCACTGAAAAGCCTCAAACCACAGTTTACATTGGCAAGATTGCACCAACTGTGGAAAATGAGTTCATGCTATCTCTTCTTCAATTATGTGGACCTATCAAGAGCTGGAAACGTCCTCAAGATTTATCAACTGGAACTCCTAAAGGTTTTGGTTTGTATGAGTTTGAGTCTGCAGAAGGGGTTCTCCGTGCCTTGCGTCTCCTTACTAAATTGAATATTGATGGGCAAGAACTAGTGGTCAATGTGAATCAAGCTATGAAAGAATATCTGGAGCGGTATGTTAAGAAAAAACCTGAGAACTCAGAGAGCAAAGAAACTCAAACAGGAGTTGATAAAAATGATGAAGGTGCAAAACCGTCTGATGCCAATGAGGATGCAAAGCCTAATACAGATCACTCAAATAAAGAGGATAATGAAACTGGGAACAAGGAATCCCATGATGTGGCAAACTTTGGGATTATCACTGATGAAGATAGAGAAGCTGATCGCGAGGCTATAGAAAAGATCACAAAAATGATAGAGGAAAGGTTGAAGACAAGACCTTTGCCTCCACCACCTCCACAGCCTACTGGCGATGTCTCTGTGAATTTAACTTCAGAACAACCTGCTAAAACAAGAGATGGAGACTCTGATGTCGATACAGAGAAGAATGAAACAGCTGAAAATAAAAATGAGAGAGAGACAAACAGTGACAAACCAACTGGTGAACATGATAGGCCTGAAACCCCTGAGAGAAGGCATGACAGGAAAAGCAGAGAGAGAGACCGAGACAGGGAACTAAAACGAGAAAAGGAAAGAGAACTTGAAAGATATGAAAGAGAAGCAGAACGGGAACGTATTCGGAAAGAGAGGGAACAAAGACGGAGGGTTGAGGAGGCTGAGCGCCAGTATGAGGCATATTTGAAGGAATGGGAGTATAGAGAAAGAGAGAAAGAGAAAGAACGCCAGTATGAAAAGGAGAAGGAAAAGGAAAGGGAACGCAAACGGAGAAAGGAGATACTTTACGATGAAGAGGATGAGGATGAAGATTCTAGGAAGAGATGGCGTAGAAGTGTGCTAGAGGAGAAGAGAAAGAAGAGGCTGCGCGAGAAGGAAGATGACCTGGCAGACAGACAGAAAGAAGAGGAAGAAATTGCTGAGGCCAAAAAGAAGGCTGAGGAGGAACAGAAGCAGCAGAGGGATGCATTGAAGTTATTATCTGAGCATGTGGTAAATGTTGCTGATGAAAATATGGCTACTGAAGAGATTAATACTGAAGTCAAAAGCATTGTAGCTGAGCATGATACTGTGGCTGATTATAGTCGTGAAGGTCATATTGATGATGGTAATTCGTTTAACATCAATGATGAAGCAACCGTGGCATCTGTTGCTACAACTGATACACAGTCAAGTGGGAATGCTCCTACAAAAAAATTGGGATTTGGTCTAGTTGGTTCGGGGAAAAGAACAACCGTCCCTTCTGTTTTCCATGAAGAGGAGGACGATGATGCACACAAGGACAAAAAAATGAGGCCTTTGGTTCCAATTGATTACTCAACAGAAGAGTTGCAGGCTGTTCAACCTAATGCTTCTGGACCTACGCCACCAAATCTGGCTGCAGCTGCAGAATTTGCTAAGCGAATATCCAGTACAAATTTCAAGGAAGAGAAGCTGGATGGAGAACGGGATAGAAGTAGGCGTTCAAATGAGAAGTCAAACCATCGGGATAGGGACAGGAGTGATGAAGATGGCATTCACAACAGAGATGAAAACAAGGAGAGAAATCCTGACCGTGACAGGGATCGAGATCATGGATCAGAGAAACTTAAGACTTCTGATAACAAAAGGCTCTTGGATGCGAAACAATTAATTGATATGATACCAAAAACCAAGGAGGAGTTGTTCTCATATGAGATAGACTGGGCGGTGTATGATAAGCACCAATTACATGAAAGAATGAGGCCTTGGATTTCGAAGAAAATCAAAGAGTTTTTGGGAGAAGAAGAAAATACATTGATAGATTATATTGTTTCCAGTACACAAGAACATGTGAAAGCTTCCCAAATGCTTGAGCGTCTTCAGATCATTTTGGATGAAGAGGCAGAAATGTTTGTTCTCAAGATGTGGAGGATGCTTATCTTTGAAATAAAGAAAGTAGAGACAGGGCTAGCTTTGAGGTCAAAATCATGA 2802 0.4607 MADSVSSTATLPPNPQPSESGPPNQPDPLPKSSTPPPSTPLATNPNPNPTLLPPPPTVLYAPPQLPGVLPPSVPSFRPLAPQFSPVPAPNPAFQNPNVPPPGVASAAAVPVPQMQPMMSYQVPPGQPANPTLRPFAPMPNGYAAAPQGTVPPAGIPRYPPPYGTMVRPVYPPRPPGAINVPPISRPPVAGIPAVRPIIPPVVRPVVAPSVTPTEKPQTTVYIGKIAPTVENEFMLSLLQLCGPIKSWKRPQDLSTGTPKGFGLYEFESAEGVLRALRLLTKLNIDGQELVVNVNQAMKEYLERYVKKKPENSESKETQTGVDKNDEGAKPSDANEDAKPNTDHSNKEDNETGNKESHDVANFGIITDEDREADREAIEKITKMIEERLKTRPLPPPPPQPTGDVSVNLTSEQPAKTRDGDSDVDTEKNETAENKNERETNSDKPTGEHDRPETPERRHDRKSRERDRDRELKREKERELERYEREAERERIRKEREQRRRVEEAERQYEAYLKEWEYREREKEKERQYEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRSVLEEKRKKRLREKEDDLADRQKEEEEIAEAKKKAEEEQKQQRDALKLLSEHVVNVADENMATEEINTEVKSIVAEHDTVADYSREGHIDDGNSFNINDEATVASVATTDTQSSGNAPTKKLGFGLVGSGKRTTVPSVFHEEEDDDAHKDKKMRPLVPIDYSTEELQAVQPNASGPTPPNLAAAAEFAKRISSTNFKEEKLDGERDRSRRSNEKSNHRDRDRSDEDGIHNRDENKERNPDRDRDRDHGSEKLKTSDNKRLLDAKQLIDMIPKTKEELFSYEIDWAVYDKHQLHERMRPWISKKIKEFLGEEENTLIDYIVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKKVETGLALRSKS* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1628 933 MobiDBLite consensus disorder prediction 415 503 - -
Apr7g1628 933 CDD RRM_RBM25 218 301 IPR034268 -
Apr7g1628 933 Coils Coil 517 545 - -
Apr7g1628 933 MobiDBLite consensus disorder prediction 519 558 - -
Apr7g1628 933 Gene3D - 210 327 IPR012677 -
Apr7g1628 933 SUPERFAMILY RNA-binding domain, RBD 193 295 IPR035979 GO:0003676
Apr7g1628 933 SMART pwi_2 849 922 IPR002483 GO:0006397
Apr7g1628 933 Gene3D PWI domain 812 928 - -
Apr7g1628 933 MobiDBLite consensus disorder prediction 308 373 - -
Apr7g1628 933 MobiDBLite consensus disorder prediction 15 64 - -
Apr7g1628 933 Pfam PWI domain 856 919 IPR002483 GO:0006397
Apr7g1628 933 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 218 296 IPR000504 GO:0003723
Apr7g1628 933 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 28 933 - -
Apr7g1628 933 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 220 289 IPR000504 GO:0003723
Apr7g1628 933 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 28 933 - -
Apr7g1628 933 MobiDBLite consensus disorder prediction 697 719 - -
Apr7g1628 933 MobiDBLite consensus disorder prediction 571 604 - -
Apr7g1628 933 MobiDBLite consensus disorder prediction 667 818 - -
Apr7g1628 933 Coils Coil 569 613 - -
Apr7g1628 933 SMART rrm1_1 219 292 IPR000504 GO:0003723
Apr7g1628 933 Coils Coil 465 514 - -
Apr7g1628 933 ProSiteProfiles PWI domain profile. 836 933 IPR002483 GO:0006397
Apr7g1628 933 SUPERFAMILY PWI domain 854 921 IPR036483 GO:0006397
Apr7g1628 933 MobiDBLite consensus disorder prediction 1 64 - -
Apr7g1628 933 MobiDBLite consensus disorder prediction 385 503 - -
Apr7g1628 933 MobiDBLite consensus disorder prediction 753 818 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1628 K12822 - gmx:100809428 1154.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1628 7 23445839 23452490 Apr7g1628 7 23445839 23452490 ECH