Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1624 ATGGCTGCGGAGAAGGTTGAGTTCACAGACTTGCCCCTCAAGAGACAGAGGGAAGAAGAAGAGCAACAACAAAATGGTGTCTCTGAGACTGTTTCCAATGAGCCTCAACCTCTTGGTATATCTGCTGTTATTCCTGGTTGGTTCTCTGAAATCAGCCCAATGTGGCCCGGGGAGGCACACTCCTTGAAGGTGGAAAAGATTTTGTTTCAAGGAAAGTCTGATTATCAGAATGTCATGGTCTTCCAGTCATCAACATATGGTAAGGTTCTTGTTCTGGATGGAGTCATTCAGCTCACAGAAAGGGATGAGTGTGCCTACCAAGAGATGATCACTCATCTTCCTCTTTGCTCTATTCCTAGTCCCAAAAAGGTTTTGGTTATTGGTGGAGGAGATGGTGGAGTCCTACGTGAAGTTTCACGCCATTCTTCAATAGAGAAAATAGACATTTGTGAAATTGACAAGATGGTTGTTGACGTGTCCAAACAGTTTTTCCCTGATATAGCAGTAGGTTTTGATGATCCACGTGTGACACTTCATATCGGTGATGGAGTTGCATTTTTGAAAGCAGTTCCAGAAGGAACTTATGATGCAGTTATTGTGGATTCATCTGATCCAATTGGTCCTGCTCAAGAGCTTTTTGAGAAGCCTTTTTTTGAGTCGGTTGCAAGAGCTCTCCGTCCAGGAGGAGTTGTGTGTACTCAAGCAGAAAGTATATGGCTTCACATGCATATAATAGAGGATATTGTGGCTAATTGTCGCCAGATATTCAAAGGTTCTGTTAACTATGCTTGGACCACAGTTCCTACATACCCAAGTGGGATGATTGGTTTTATGCTTTGCTCAACTGAGGGGCCTTCTGTGGATTTCAAGCATCCAGTGAATCCTATAGACGAGAATGATAGTCAGAAGTCAGCTAGACCATTGAGATTTTACAACTCTGAGATTCATTCAGCAGCTTTCTGTTTGCCATCTTTCGCCAAAAGGGCAATTGCTTCTAAAACAAATTGA 1008 0.4286 MAAEKVEFTDLPLKRQREEEEQQQNGVSETVSNEPQPLGISAVIPGWFSEISPMWPGEAHSLKVEKILFQGKSDYQNVMVFQSSTYGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPSPKKVLVIGGGDGGVLREVSRHSSIEKIDICEIDKMVVDVSKQFFPDIAVGFDDPRVTLHIGDGVAFLKAVPEGTYDAVIVDSSDPIGPAQELFEKPFFESVARALRPGGVVCTQAESIWLHMHIIEDIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDSQKSARPLRFYNSEIHSAAFCLPSFAKRAIASKTN* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1624 335 Pfam Spermidine synthase tetramerisation domain 46 100 IPR035246 -
Apr7g1624 335 Pfam Spermine/spermidine synthase domain 103 290 - -
Apr7g1624 335 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 43 330 IPR029063 -
Apr7g1624 335 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 124 137 IPR030373 -
Apr7g1624 335 TIGRFAM speE: spermidine synthase 47 325 IPR001045 GO:0003824
Apr7g1624 335 CDD AdoMet_MTases 123 234 - -
Apr7g1624 335 PANTHER SPERMIDINE/SPERMINE SYNTHASE 12 335 IPR001045 GO:0003824
Apr7g1624 335 MobiDBLite consensus disorder prediction 1 37 - -
Apr7g1624 335 Hamap Polyamine aminopropyltransferase [speE]. 46 331 IPR001045 GO:0003824
Apr7g1624 335 MobiDBLite consensus disorder prediction 1 24 - -
Apr7g1624 335 Gene3D Vaccinia Virus protein VP39 98 335 IPR029063 -
Apr7g1624 335 Gene3D Spermidine synthase, tetramerisation domain 39 97 IPR037163 -
Apr7g1624 335 PIRSF Spermidine_synth 36 335 IPR030668 GO:0006595
Apr7g1624 335 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 45 282 IPR030374 -
Apr7g1624 335 PANTHER SPERMIDINE SYNTHASE-RELATED 12 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1624 Apr-Chr7 23411786 23415333 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1624 K00797 - gmx:100792107 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1624 7 23411786 23415333 Apr7g1624 7 23411786 23415333 ECH