Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1587 ATGGGACTTCTTCATTGTCCCTGTTGCCACTCACAGCACCAAAATCCACAACCTCAAACCTCCCACCACCTTCATTCAGAATCATCAACCTCATCCTCCCTCTCTTCACAACCAAGTCTTCCTTCAGTTCCCTCTCTCACCCCACCCTCTCATCATCCTCAACAACACCAACCCACACACCATAAACTCATCACTACCATCAAAGGCCACACCTCACCCGTCTTCTCCCTTTCTCTCCACGGCAAGTTCCTCTATAGTGCCTCTTCCAGCAGCGAAATAAGAACATGTTTTAGAGACCCTTTTGCTCTCCAAACCTCAAACAACACCACCAACGTTGTAGCAACCAGCAAAGGAGCCATCAAGTCACTCTTAGTTTCCAACGACACGCTATTCAGTGCTCACCAAGACCACAAAATTCGGGTTTGGAAAATCGAAACCAGCGATCCAAACCATAGGTACAAATGCATAGCTACCCTTCCCACGTTCAATGACCGTTTTTCAAAGATGTTTTCTTCCAAGAACTACGTTGAGGTTCGACGGCACAAGAAGTGCACGTGGGTGCATCACGTGGACACTGTCTCTGCTCTTGCTTTGTCCAAAGATGGATTTCTTCTTTACTCTGCTTCGTGGGACAGAACATTAAAAATCTGGCGAACGTCGGATTTCAAGTGTTTGGAGTCTGTGAGGAATGCACACGAGGATGCCATCAATGCCTTGGTTTTGTCCAGTGATGGGGTCGTTTACACGGGTTCCGCAGATAAAAAGATAAAGATGTGGAAGAAGAATGAGGGTGAGAAAAAGCATTCACTTGTGGGAACATTGGAGAAGCATAAATCTGCTGTGAATGCGTTGGCTCTTAACTCAGATGGGTCAGTGTTGTATTCGGGTGCGTGTGACAGGTCAATTTTGGTGTGGGAGAATGATGATGATAATAATAATAATAATAATATGGTGTTGGTGGGGGCTTTGAGAGGGCACACAAAGGCTATATTGTGTTTGGTGGTGGTGACTGATTTGGTGTGTAGTGGATCGGCTGATAACAGTGTTAGGATATGGAGGAGAAGGGTTGAGAAGAGTTATTCGTGCTTGGCGGTGTTAGAAGGTCATACACGACCTGTGAAGTGTTTGGCTATGGTTGTTGACTCTAATAATGGTGGTCCTGATGATGATAATACTAGTTCTTATCTGGTTTACAGTGGTGGTCTGGATTGTGACATTCAAGTTTGGCAAATTCGCGTTCCTCTGATTTGA 1251 0.454 MGLLHCPCCHSQHQNPQPQTSHHLHSESSTSSSLSSQPSLPSVPSLTPPSHHPQQHQPTHHKLITTIKGHTSPVFSLSLHGKFLYSASSSSEIRTCFRDPFALQTSNNTTNVVATSKGAIKSLLVSNDTLFSAHQDHKIRVWKIETSDPNHRYKCIATLPTFNDRFSKMFSSKNYVEVRRHKKCTWVHHVDTVSALALSKDGFLLYSASWDRTLKIWRTSDFKCLESVRNAHEDAINALVLSSDGVVYTGSADKKIKMWKKNEGEKKHSLVGTLEKHKSAVNALALNSDGSVLYSGACDRSILVWENDDDNNNNNNMVLVGALRGHTKAILCLVVVTDLVCSGSADNSVRIWRRRVEKSYSCLAVLEGHTRPVKCLAMVVDSNNGGPDDDNTSSYLVYSGGLDCDIQVWQIRVPLI* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1587 416 PANTHER SIMILARITY TO GTP-BINDING REGULATORY PROTEIN AND WD-REPEAT PROTEIN 23 414 - -
Apr7g1587 416 MobiDBLite consensus disorder prediction 12 60 - -
Apr7g1587 416 CDD WD40 63 410 - -
Apr7g1587 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 352 - -
Apr7g1587 416 MobiDBLite consensus disorder prediction 12 41 - -
Apr7g1587 416 Pfam WD domain, G-beta repeat 270 305 IPR001680 GO:0005515
Apr7g1587 416 Pfam WD domain, G-beta repeat 320 352 IPR001680 GO:0005515
Apr7g1587 416 Pfam WD domain, G-beta repeat 223 260 IPR001680 GO:0005515
Apr7g1587 416 Pfam WD domain, G-beta repeat 187 217 IPR001680 GO:0005515
Apr7g1587 416 Pfam WD domain, G-beta repeat 361 409 IPR001680 GO:0005515
Apr7g1587 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 229 269 IPR001680 GO:0005515
Apr7g1587 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 186 217 - -
Apr7g1587 416 PRINTS G protein beta WD-40 repeat signature 205 219 IPR020472 -
Apr7g1587 416 PRINTS G protein beta WD-40 repeat signature 247 261 IPR020472 -
Apr7g1587 416 PRINTS G protein beta WD-40 repeat signature 340 354 IPR020472 -
Apr7g1587 416 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 23 414 IPR045182 -
Apr7g1587 416 SUPERFAMILY WD40 repeat-like 60 411 IPR036322 GO:0005515
Apr7g1587 416 Gene3D - 175 414 IPR015943 GO:0005515
Apr7g1587 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 352 IPR001680 GO:0005515
Apr7g1587 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 274 315 IPR001680 GO:0005515
Apr7g1587 416 SMART WD40_4 359 410 IPR001680 GO:0005515
Apr7g1587 416 SMART WD40_4 179 218 IPR001680 GO:0005515
Apr7g1587 416 SMART WD40_4 267 306 IPR001680 GO:0005515
Apr7g1587 416 SMART WD40_4 109 143 IPR001680 GO:0005515
Apr7g1587 416 SMART WD40_4 316 353 IPR001680 GO:0005515
Apr7g1587 416 SMART WD40_4 221 260 IPR001680 GO:0005515
Apr7g1587 416 SMART WD40_4 60 97 IPR001680 GO:0005515
Apr7g1587 416 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 274 306 - -
Apr7g1587 416 ProSiteProfiles Trp-Asp (WD) repeats profile. 186 227 IPR001680 GO:0005515
Apr7g1587 416 Gene3D - 52 174 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1587 Apr-Chr7 23016653 23018197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1587 222 411 Miscellaneous Gene Families AT5G08390 26.020 5.21e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1587 - - gmx:100778775 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1587 7 23016653 23018197 Apr7g1587 7 23016653 23018197 ECH