Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1586 ATGAAATACCCATTGGCCATTAACATGAAACTCCACCTTTCAGCTTTGCTATTATTCCTTCTCCTTGTCGATAAATCCTACTTTGCAGTTTCTATCTCTCCCAAAGTCTATGAATATTTAAACCACGTAGGGAAGGAAGTGGCTACGAACCTTTGGGAAGAAGGCATGAAAGGCAAGGAAAGCACTATCGTAAAGTGGTTCTCTCCCCCACAACCAAACCTACCCCGGATACAAAAAAAAGGCTTCTATCGTTTCAAAGCATACCTCTCTAATTTCAGCTACCTTCAATCCTCTGGACCATTCAACGATTATATCGACCAGGAAACAATATCAGCCTTTAAAACTTATCAGGGATATTTCAATCTCCAAATCACAGGACTACCAAACAAGCAGACTATTCAGCAAATGTTGCTACCACGATGCGCTGTCCCCGACATTAATTTCAATTACTCCTTCGCCGCCGATGGCCTTTCATGGCCAAAAGCTGGGAACACTTGGTTTCCAAAGGGTAAGAGAAACCTCACCTACGGTTTTCCTTCTCCAGACAAATTCCCAGCCAACATGACCAAGGTGTTCAGAGATGCATTCACGCGCTGGGCAAAGGCCACGACAGTGTTGAACTTCACGGAGACAACCTACGATAACGCCGACATCAAGGTTGGGTTATATGCTTTCAATGACAAAATTGAAGGCATGGTGTACGGGGATAGTATTATTATAAGATCGAAACCTTCTTCTGATGTTATGACAGGGGAGATACGTCTCGATGGTAACCAGAGCTGGGCGTTGCCGAGTGAATATAAGAACATTTCATGGAAGAATGATATTCTGGATTTGGAGAGTGTGGCGATGCACCAGATTGGACATTTACTTGGACTTGACCATTCTTCTGAGAAGGATTCGGTGATGTACCCTTCTATATTGCCATCTAAGCAAAGGAAGGTGGAGCTCTCGGAAAATGATAAGGAGAACATTCTGCAACGTTATACTAGCGCCAACTCTGATAGACATAGCGCCAACTCTGATAGCCATAGCGCCAACTCTGCTAGACATGGTAGCCTCTGGGGACTCCTAAGTATAGCTTTGTCTCTTGCTTACATGATTTTCTTGTATTAG 1116 0.4373 MKYPLAINMKLHLSALLLFLLLVDKSYFAVSISPKVYEYLNHVGKEVATNLWEEGMKGKESTIVKWFSPPQPNLPRIQKKGFYRFKAYLSNFSYLQSSGPFNDYIDQETISAFKTYQGYFNLQITGLPNKQTIQQMLLPRCAVPDINFNYSFAADGLSWPKAGNTWFPKGKRNLTYGFPSPDKFPANMTKVFRDAFTRWAKATTVLNFTETTYDNADIKVGLYAFNDKIEGMVYGDSIIIRSKPSSDVMTGEIRLDGNQSWALPSEYKNISWKNDILDLESVAMHQIGHLLGLDHSSEKDSVMYPSILPSKQRKVELSENDKENILQRYTSANSDRHSANSDSHSANSARHGSLWGLLSIALSLAYMIFLY* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1586 371 Gene3D Collagenase (Catalytic Domain) 75 337 IPR024079 GO:0008237
Apr7g1586 371 Pfam Putative peptidoglycan binding domain 86 136 IPR002477 -
Apr7g1586 371 PANTHER MATRIXIN PROTEIN 76 331 - -
Apr7g1586 371 MobiDBLite consensus disorder prediction 330 349 - -
Apr7g1586 371 PANTHER MATRIX METALLOPROTEINASE 76 331 - -
Apr7g1586 371 SUPERFAMILY PGBD-like 73 146 IPR036365 -
Apr7g1586 371 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 171 329 - -
Apr7g1586 371 Pfam Matrixin 172 329 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Apr7g1586 371 PRINTS Matrixin signature 136 149 IPR021190 GO:0004222|GO:0006508|GO:0008270
Apr7g1586 371 PRINTS Matrixin signature 192 207 IPR021190 GO:0004222|GO:0006508|GO:0008270
Apr7g1586 371 PRINTS Matrixin signature 282 307 IPR021190 GO:0004222|GO:0006508|GO:0008270
Apr7g1586 371 PRINTS Matrixin signature 317 330 IPR021190 GO:0004222|GO:0006508|GO:0008270
Apr7g1586 371 SMART col_5 162 331 IPR006026 GO:0006508|GO:0008237|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1586 Apr-Chr7 23009275 23010600 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1586 - - aprc:113869551 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1586 7 23009275 23010600 Apr7g1586 7 23009275 23010600 ECH