Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1577 ATGGCCAAAATGAGTACCCATTTTCACTCTCTTCCACTATTAGTATTCACCCTATCCTTCTTATTGGGCCGATGCAGACCTGACCCTGACCCACTTCAAGACTACTGTGTTGCAGATAACCAAAACAATTTTTTCATCAATGGTGAGCCTTGCATCAACCCAAAACAAGTTTCCCCATCGCATTTTGTCACATCTGCATTATCCAAGCCTGGCAACACTAGTAACACATTCGGCTTCAGTGTCACCCCCACAAACACTTTTAATCTTCCTGGGCTTAACACATTGGGCCTTGTACTGGTCCGGGTCGATATAGCGGGTAACGGGATTGTGCCACCTCACTCTCATCCACGGGCCTCAGAAGTTACCACTTGCCTCAAGGGCCTGCTTCTTGTGGGCTTTATTGACACATCCAACCGTGTCTTTACCCAAAACCTGAAGCCCGGTGAGTCATTTGTGTTCCCAAAGGGCCTTGTACATTTCTTATTTAACAGTGACACTAGGGAACCAGCATTGGCCCTATCTGGTCTCAACAGCCAGAACCCAGGTGCACAAATAGCATCACTTGCATCATTTGCTAGCAAGCCTTCTATTCCTAATGAAATACTTGAGAAAGCTTTCCAAATTAGTGGCAAGGAAGTGGAAACTATTCGTAGAAACCTTGGAGGATGA 669 0.4589 MAKMSTHFHSLPLLVFTLSFLLGRCRPDPDPLQDYCVADNQNNFFINGEPCINPKQVSPSHFVTSALSKPGNTSNTFGFSVTPTNTFNLPGLNTLGLVLVRVDIAGNGIVPPHSHPRASEVTTCLKGLLLVGFIDTSNRVFTQNLKPGESFVFPKGLVHFLFNSDTREPALALSGLNSQNPGAQIASLASFASKPSIPNEILEKAFQISGKEVETIRRNLGG* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1577 222 Gene3D Jelly Rolls 27 222 IPR014710 -
Apr7g1577 222 CDD cupin_OxOx 28 220 - -
Apr7g1577 222 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Apr7g1577 222 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Apr7g1577 222 PRINTS Germin signature 177 192 IPR001929 GO:0030145
Apr7g1577 222 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Apr7g1577 222 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 13 221 - -
Apr7g1577 222 SUPERFAMILY RmlC-like cupins 28 220 IPR011051 -
Apr7g1577 222 Pfam Cupin 67 213 IPR006045 -
Apr7g1577 222 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 1 MEMBER 1 13 221 - -
Apr7g1577 222 SMART Cupin_1_3 65 214 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1577 Apr-Chr7 22916071 22917002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1577 3 221 Miscellaneous Gene Families AT5G39130 40.807 1.58e-52 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1577 - - lja:Lj2g3v1365980.1 374.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1577 7 22916071 22917002 Apr7g1577 7 22916071 22917002 ECH