Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1456 ATGCAGTATAACAGAGTAACATGGGGTAGCCACCATAATAAGCATTCCATGAGAAGCGATCACATAACACTAACAAAACTGGTAGCAGAAGGGTTTTACAAAGAAGCCCTTCACCTCTTCTCACAACTCCACTCTTCTTCCACCACTCTTCACTCCTTCACTTTCCCCACTCTCTTCAAAGCATGCACCAAACTCTGTTCTCCTTCCAACGCCCAAATCCTCCATACCCATCTCCTCAAAACCGGTTTTTATTCTGACCCACATGCCTCCTCAGCCCTCACCGCCGCCTACGCTTCCAACCGTCGCTTCTTTCTCGACGCACGCAAGGTGTTCGACGAAATGCCCCAACCAAACCTTGCTTCTCTCAACGCCGCGCTTTCTGGTTTTTCGCGAAACGGGCGTCGAGGAGAAGCTCTTGCTCTGTTCCAGCGAGTTGGGTTGGTGTCCTTGAGACCCAACTCCGTCACTGTCGCGTGTTTGCTCGCTGCTACTAACGTGGATACTAACCACGTTGCGCAGTTGCATTGCTGTGCATTTAAGTTAGGGGTTGAATTGGATGTTTATGTTGCCACCGCGCTTGTTACTGCTTATTCGAAGTGTGGAGAGTTAGTTTCTGCGACTAAGGTGTTTGATAAGTTGTTATTGAAAAATGTGGTGAGTTACAATGCTTTCATTTCGGGTTTGTTTCAGAATGGTGTTCCTCGTTTGGCCTTGGATGTGTTTAAGGAGATGATGAGGGGGAAGGAGTGTTTAGAGCATAGAATTAATTCAGTGACGTTGGTGTCTGTTCTTTCTGCGTGTGTTAGCCTCTTGTATGTTCGTTTTGGAAGGCAGGTTCATGGGCTTACAGTGAAACTTAAAGCAGGTGAAGAGGTTATGGTGGTGACTGCACTCGTGGATATGTATTCGAAGTGTGGTTTTTGGCGTTCTGCTTTTGATGTCTTTTCAGCGGTTGAAGGGGAGAGAAGGAATTTGATCACTTGGAACTCCATGATTGCGGGAATGATGTTGAATGAACAGAGTGAGAGAGCTGTTGATATGTTTCAGAGGATGGAGGGTGAAGGGCTGCAACCTGATTCAGCAACTTGGAATTCAATGATCAGTGGGTTTGCAAAACAGGGTGTGCGTGTGGAGGCTTTCAAGTACTTAAGGAAAATGCAGTCTACTGGAGTGACTCCGTGTTTGAAAATTCTTACAAGTCTTTTGTCGGCGTGTGCGGATTCGTGTGTATTAGGACATGGAAAAGAGGTACATGGATATATTATAAGGATTAACGTTAATATGGATGATTTCTTGGCAACTGCTCTTGTTGACATGTACATGAAATGTGGGCATGCTTCGCGGGCACGGGGAGTTTTTGACCAGTTTGATGCAAAACCTTATGACCCGGCATTTTGGAATGCAATGATAGGAGGGTATGGAAGAAATGGAGATCACGAATCTGCCTTTGAAATCTTTGATAAAATGCTGGAAGAAATGGTTCAACCAAACAGTGCAACATTTGTTAGTGTTTTATCTGCTTGCAGCCACACGGGTCAGGTTGACAGAGGATTACATGTTTTCAGAATGATGAGAAGAGAGTATGGCTTGCAGCAAAGGCCTGAGCATTCTGGTTGCATGGTTGATCTTTTGGGTCGGTCTGGTCGATTGGGTGAAGCTCGAGACTTGGTGCAGGAACTGGCAGAGCCTCCTGCATCAGTTTTTGCTTCTTTGCTTGGTGCATGTAGGGGTTACCTAGATTCTAATCTTGGGGAAGAAGTGGCCATGAAGCTTCTAGATATAGAACCAGAAAACCCGGCTCCTTTGGTGGTCTTGTCTAACATATATGCTGAGTTGGGAAGATGGAAGGAAGTAGAAAGGATAAGAAGGATGATCACAGATAAAGGATTGGACAAACTCTCTGGCTTTAGCATGATAGAAGTTGCGTGA 1929 0.4552 MQYNRVTWGSHHNKHSMRSDHITLTKLVAEGFYKEALHLFSQLHSSSTTLHSFTFPTLFKACTKLCSPSNAQILHTHLLKTGFYSDPHASSALTAAYASNRRFFLDARKVFDEMPQPNLASLNAALSGFSRNGRRGEALALFQRVGLVSLRPNSVTVACLLAATNVDTNHVAQLHCCAFKLGVELDVYVATALVTAYSKCGELVSATKVFDKLLLKNVVSYNAFISGLFQNGVPRLALDVFKEMMRGKECLEHRINSVTLVSVLSACVSLLYVRFGRQVHGLTVKLKAGEEVMVVTALVDMYSKCGFWRSAFDVFSAVEGERRNLITWNSMIAGMMLNEQSERAVDMFQRMEGEGLQPDSATWNSMISGFAKQGVRVEAFKYLRKMQSTGVTPCLKILTSLLSACADSCVLGHGKEVHGYIIRINVNMDDFLATALVDMYMKCGHASRARGVFDQFDAKPYDPAFWNAMIGGYGRNGDHESAFEIFDKMLEEMVQPNSATFVSVLSACSHTGQVDRGLHVFRMMRREYGLQQRPEHSGCMVDLLGRSGRLGEARDLVQELAEPPASVFASLLGACRGYLDSNLGEEVAMKLLDIEPENPAPLVVLSNIYAELGRWKEVERIRRMITDKGLDKLSGFSMIEVA* 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1456 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 359 393 IPR002885 -
Apr7g1456 642 Pfam E motif 578 640 IPR046848 -
Apr7g1456 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 462 496 IPR002885 -
Apr7g1456 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 324 358 IPR002885 -
Apr7g1456 642 SUPERFAMILY TPR-like 299 493 IPR011990 GO:0005515
Apr7g1456 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Apr7g1456 642 Pfam PPR repeat family 465 509 IPR002885 -
Apr7g1456 642 Pfam PPR repeat family 216 268 IPR002885 -
Apr7g1456 642 Pfam PPR repeat family 324 372 IPR002885 -
Apr7g1456 642 Gene3D Tetratricopeptide repeat domain 284 416 IPR011990 GO:0005515
Apr7g1456 642 Gene3D Tetratricopeptide repeat domain 170 272 IPR011990 GO:0005515
Apr7g1456 642 TIGRFAM PPR: pentatricopeptide repeat domain 326 360 IPR002885 -
Apr7g1456 642 TIGRFAM PPR: pentatricopeptide repeat domain 362 393 IPR002885 -
Apr7g1456 642 TIGRFAM PPR: pentatricopeptide repeat domain 219 247 IPR002885 -
Apr7g1456 642 TIGRFAM PPR: pentatricopeptide repeat domain 500 527 IPR002885 -
Apr7g1456 642 TIGRFAM PPR: pentatricopeptide repeat domain 466 497 IPR002885 -
Apr7g1456 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 118 152 IPR002885 -
Apr7g1456 642 Pfam PPR repeat 296 316 IPR002885 -
Apr7g1456 642 Pfam PPR repeat 121 144 IPR002885 -
Apr7g1456 642 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 25 637 - -
Apr7g1456 642 PANTHER OS07G0578800 PROTEIN-RELATED 25 637 IPR045215 GO:0003723|GO:0009451
Apr7g1456 642 Gene3D Tetratricopeptide repeat domain 21 169 IPR011990 GO:0005515
Apr7g1456 642 Gene3D Tetratricopeptide repeat domain 465 637 IPR011990 GO:0005515
Apr7g1456 642 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 497 527 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1456 Apr-Chr7 21677000 21680513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1456 50 642 Glycoside Hydrolase AT3G49170 28.741 1.24e-69 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1456 - - aprc:113868723 1249.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1456 7 21677000 21680513 Apr7g1456 7 21677000 21680513 ECH