Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1171 ATGGTGAATCCCCTCAGAGTGAACAACAACAACAAGCGTGGTGTGCTTGCTCGTTTGAGAACCTTCATCAACTCTCAGGGCTTTCACTCCCCTGCGCCCAGAGGACCAGTGCAAGATCAATCCTCTCCAGAAAAGGGCTCCGATTACTCCATTTACCAAGGCCGCATTGATGTCTCGAAATGGAAGACTTTGGATGCAAAGAAGCTTGGTGTAACTAGTTCTATGATTTCACATCCATCTTGGCTTGTCCTGAAACTTCTTCGGAGCAAAGGATTTGAATCCTATTTAGTAGGTGGGTGTGTGAGAGATCTACTACTTAATAGAACTCCAAAAGATTTTGATGTTATCACAACAGCAGAGCTTATGCAGGTGAGAAAGCAGTTTCGACGTTTAGGTCGTGCTCAAATTGTTGGACGACGTTTTCCAGTATGCTTGGTCCATATAAAAGGTTCTGTAGTTGAGGTAACCAGTTTTGAGACATTGGCACGAACTTCCAATGGTAAGGAAAAGATTTTATATTCTCTGTTGCCCAAATGCAGTAATAAAGAAGACTTATTTCGCTGCAAAAACTCCTTGAGCAGGGACTTCACAATCAATAGTTTATTTTATGACCCCTTTGCCAGTAAAATCTATGATTATACCAATGGAATGGCCGATTTGAAATCCTTAAAGCTTGAAACCGTTATCCCTGCTCAGCTGTCCTTTAAAGAGGATCCTGGAAGAATTTTGCGCGGCTTCAGAATTGCAGCTCGTCTTGGTTTATCATTATCAAGAGAGACTGAGGATGCAATATGGACATATTCTTCACTAGTTAAGAGCTTGGACAAGAGCAAAATAATGATTGAATTGAACTATATGCTGTCATATGGAGCTGCTGAAACATCTCTGCGCCTACTTTGGAAATTCAAATTGCTTGAATTTTTCCTTCCTGTACATGCAGCATATCTCGATGAGCAGGTGATTGAAGAAGATGCTCAGCCTTCCAATATGTTGATGAAATTATTCTTCCATCTGGATAGTTTGGTTGCATGTGATCGACCTTGTGATTGCATTGTATGGATTGGATTGCTAGCATTTCACTTGGCATTAGTAAATAATCCTCAAGATGCTCTTGTAGTGTGGGCATTTGCTTCTGTTCTACGTCATGGGGAGTGGGAAGAAGGTGTTAAATTTGCTAAAGAATGTGCAAAGTCAAGTGTTAATTTTGCACCTGAAATAAGAACGTCCAGTATATACAAATCAGATGAAGAAATTGCAAAAGCAGTCACTAAATTGGCATCTTTGGTGATGCACTCCATACCCGCTCTGGTTGAAAATAATAGTCTTGTTCAGTTCATGTCTAAATACCCATCTTTTCCAAAATCTGGCATGGTATTTGTGTCAAGGAAAACAGCAAAACTTGTTTCTGCAATTTTTAAAGCGATGGCCAATGATGTTGAATTTTTCAAGAGTGAAAGAAGAAAAAATTCAAAGATAAATTATGCCTTGCTTGGGAAGGGCGACCTTTCAGAGACTGGATTTGTTTTGGGTAAAATTATTCTTCAAACTATGAGTAGTGGAATTGTTGGGGATGGGGAGGATTATGAAGCTGAAAAATGTCACCTTAAGACTGCGGGCACTGAAGAAATTGGTCAGTTGCAACTTTCAGATCCAGAATATAGGCAAGAAAAAATCAAGAAACAGAAATTGGTTGAGAATAGGTGTATTGCAGAGGAGAAAATGAGCTCAGGGAATTATGATTTGTTTGGGAAAATTGAATACAAAGAAAGTAATGAAGAGTACCAGAAGCTAGTTGAGTTAACCCAGAAGGTTGATCTATCTAGGACAAAGGACACTTCACCAAAAAGGAAAAATTATAACAGAAAAAAGCTGATAAATGATAGGAAGAATATCATTAATGCCAATAAAAGCTCTTCAGACCAAGCTAGGCATATGAAGAAGATAGACGAACACAATACATGTACTCCACCACAATCTACAGTGTCTGAGAATCATCAGGTGATAGCTAACAACTACAACATAGACGAGGATGAAGAGACAGCAAGTGAGTCAGTTTTAAAGAAGAAAAGACCGCATTCATCACTTGTTGACATCTTCAACAGGAAAGAAAGAAAAAAACCACATAAAAACAAGCATAGTGTGCCACAACTCCCAGTCTCCAAGTGA 2166 0.392 MVNPLRVNNNNKRGVLARLRTFINSQGFHSPAPRGPVQDQSSPEKGSDYSIYQGRIDVSKWKTLDAKKLGVTSSMISHPSWLVLKLLRSKGFESYLVGGCVRDLLLNRTPKDFDVITTAELMQVRKQFRRLGRAQIVGRRFPVCLVHIKGSVVEVTSFETLARTSNGKEKILYSLLPKCSNKEDLFRCKNSLSRDFTINSLFYDPFASKIYDYTNGMADLKSLKLETVIPAQLSFKEDPGRILRGFRIAARLGLSLSRETEDAIWTYSSLVKSLDKSKIMIELNYMLSYGAAETSLRLLWKFKLLEFFLPVHAAYLDEQVIEEDAQPSNMLMKLFFHLDSLVACDRPCDCIVWIGLLAFHLALVNNPQDALVVWAFASVLRHGEWEEGVKFAKECAKSSVNFAPEIRTSSIYKSDEEIAKAVTKLASLVMHSIPALVENNSLVQFMSKYPSFPKSGMVFVSRKTAKLVSAIFKAMANDVEFFKSERRKNSKINYALLGKGDLSETGFVLGKIILQTMSSGIVGDGEDYEAEKCHLKTAGTEEIGQLQLSDPEYRQEKIKKQKLVENRCIAEEKMSSGNYDLFGKIEYKESNEEYQKLVELTQKVDLSRTKDTSPKRKNYNRKKLINDRKNIINANKSSSDQARHMKKIDEHNTCTPPQSTVSENHQVIANNYNIDEDEETASESVLKKKRPHSSLVDIFNRKERKKPHKNKHSVPQLPVSK* 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1171 721 Pfam Probable RNA and SrmB- binding site of polymerase A 253 315 IPR032828 -
Apr7g1171 721 Pfam Poly A polymerase head domain 95 224 IPR002646 GO:0003723|GO:0006396|GO:0016779
Apr7g1171 721 MobiDBLite consensus disorder prediction 680 703 - -
Apr7g1171 721 MobiDBLite consensus disorder prediction 673 721 - -
Apr7g1171 721 Gene3D Beta Polymerase, domain 2 61 222 IPR043519 -
Apr7g1171 721 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 14 682 - -
Apr7g1171 721 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 14 682 - -
Apr7g1171 721 SUPERFAMILY Nucleotidyltransferase 69 221 IPR043519 -
Apr7g1171 721 MobiDBLite consensus disorder prediction 26 49 - -
Apr7g1171 721 CDD NT_ClassII-CCAase 82 221 IPR002646 GO:0003723|GO:0006396|GO:0016779
Apr7g1171 721 Gene3D - 225 489 - -
Apr7g1171 721 SUPERFAMILY Poly A polymerase C-terminal region-like 225 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1171 Apr-Chr7 18601968 18609008 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1171 - - ccaj:109801320 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1171 7 18601968 18609008 Apr7g1171 7 18601968 18609008 ECH