Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1116 ATGGGTTGTTGTCATTCCAAAATAGAGAGGGAAGAAACGGTGTCTCGTTGCAAAGCAAGGAAGCGTTACATGAAGCAGTTTGTGCAAGCAAGACACGCTTTTTCTGCAGCACATGTAATGTACATTCGCTCACTTCGTGCAACTGGTTCTGCTTTGCTTCAGTTTGCAAATGCTGAAACCACCGTCCTCCATCACCACCACCACCTTCCGCCTGATCCTCAGCCCATTCTCCCACCGCCGCCGCCGCCGCGAACCCCCACCCCAATGCCGCCGCCTCCGCCTCCGCCGATGAGTCCGAGTTCGTATACGTGGACATCGGACACTACCTCCTCCCCTGCTCTTCCTCCTCCTCCTCCTCCGCCGCCGCCGCCGGTGTCTTCGTCAACCTGGGATTTCTGGGACCCCTTCATGCAGCCGGCGGCGGGTCCGATTTCTCGGTCGGCGACGGAGGAGGAGTGGGAGGCAACGACCACCACGGGTTCTGAGGTGGTGGTGATGGCGGCCGCGAGCATGACGGCTCCGCCGTCTGTGGTGAGTGGGTTTTCGAAGGAGACAGCTAGTGAGCTTGCAATGGTGGTTTCAAGGAACAGCAAGGATCTTGTTGAGGTTATGAAAGAGCTTGATGACTATTTTCTGAAAGCTGCTGATGCTGGTTCGCATGTCTCTTTGCTCCTTGAAGTTCCAAGTTCTGGCTTTTCTGATCACAGTAAAGCAAGTAAAGTGCACAGCTATGGATGGAGTCTGAGTCCATCGTTGTGGGCTTGGGGTTCTAGTCCAAAACTGAATGGATTTGGCAAGCTGGCTGAGGGAACTCCTGTTTCTGTCGGTACTTTTGGAGATAATGGAGGTGGAAGTGGTGGACACTGCTCCACTGTGGAGAGGCTATATGCATGGGAGAAGAAATTGTACCAAGAGGTTAAGAATGCCAAGACTATAAAGATGGAGCATGAGAAGAAGGTGGCACTGCTTAGGAAGCTAGAGATGAAGAGGGCAGACTATGTTAAGACAGAGAAGACAAAGAAAGAAGTCGAGAAATTAGAATCACAAATGATGGTTGCTTCTCAGGCCATTGATAGTACATCTGCTGAAATCATCAAATTAAGGGAGATAGAGCTCTACCCTCAACTCATTGAACTTGTCAAAGGATTAATGTGCATGTGGAGAAGCATGTATGAGTGCCACCAAGTCCAAAAGCATATAGTTCAGCAACTAGAGTACCTCAATACCACACCATCAAACAACCCCACATCTGAGATTCATAGGCAATCAACTCTTAAGCTGGAACTAGAAGTACAACAATGGCATCAATCCTTCTGCAACCTCTTCAAAGCCCACCGTGACTACATTCAATCCCTCACAGGTTGGTTAAGGCTCAGCCTTTTCCAGTTCAGCAAAAACCCTTTGCGCAGAACCCCTGAGGAATCAAAGATATACTCCCTTTGTGAAGAATGGCACCTTGCTGTTGATCGAATTCCAGATAAGGTAGCATCTGAAGGAATAAAAAGCTTGTTAACAATTAGTCATGCCATTGTGGTTCAACAGGCAGAGGAGCATAAACAGAAGAAGAAGTCAGATTCTGCATTTAAAGAGCTTGAGAAGAAGGTGGTTCAGCTTCGGTCCTTGGAGAGCAAGTACGGTCCATACTCCATGCCTGAATCCTCCGGTACCATGAGAACCAAGGACCCCATTGTCGAGAAACGCGCAAAGGTGGAAGCTTTGAGAGGAAAGGCAGAGGAAGAGAAGAGCAAACATGAGAAGTCGGTGAATGTAACTCGGGCAATGACACTGAATAACCTGCAAATGGGTTGCCCGCATGTTTTTCAAGGGATTGTGGGGTTTTCAAGTGTCTGCATGGAGGTTTTTGAATCTGTATACAACAAAGCCAAGGTTACTGAACAGGAGCATGACGATTATGTGCCGACTGTTTTTGACAATTTCAGCGCAAATGTGGTTGTCAATGGAAGCATTGTTAACCTGGGTTTGTGGGACACTGCTGGACAAGAGGATTATAACAGATTAAGACCTTTGAGTTACCGTGGTGCCGATGTTTTCATTCTGGCTTTCTCTCTCATAAGTAAGGCCAGTTATGAAAACGTCTCTAAAAAGTGGATTCCAGAGTTGAAGCATTATGCGCCTGGTGTCCCAATAATTCTGGTTGGCACAAAGCTTGACCTCCGGGATGATAAACAGTTCTGCACAGACCATCCTGGTGCCGTGCCTATTACCGCAGCTCAGGGAGAAGAGCTTAGGAAGCTGATTAATGCACCCGCATACATTGAATGCAGTTCAAAAACACAGGAGAACGTGAAGGCAGTCTTTGATGCAGCCATAAGAGTTGTCCTTCAACCACCTAAGCAGAAGAAAAAGAAGGGTAAAGCGCAAAAGGCCTGTTCCATATTGTGA 2403 0.4802 MGCCHSKIEREETVSRCKARKRYMKQFVQARHAFSAAHVMYIRSLRATGSALLQFANAETTVLHHHHHLPPDPQPILPPPPPPRTPTPMPPPPPPPMSPSSYTWTSDTTSSPALPPPPPPPPPPVSSSTWDFWDPFMQPAAGPISRSATEEEWEATTTTGSEVVVMAAASMTAPPSVVSGFSKETASELAMVVSRNSKDLVEVMKELDDYFLKAADAGSHVSLLLEVPSSGFSDHSKASKVHSYGWSLSPSLWAWGSSPKLNGFGKLAEGTPVSVGTFGDNGGGSGGHCSTVERLYAWEKKLYQEVKNAKTIKMEHEKKVALLRKLEMKRADYVKTEKTKKEVEKLESQMMVASQAIDSTSAEIIKLREIELYPQLIELVKGLMCMWRSMYECHQVQKHIVQQLEYLNTTPSNNPTSEIHRQSTLKLELEVQQWHQSFCNLFKAHRDYIQSLTGWLRLSLFQFSKNPLRRTPEESKIYSLCEEWHLAVDRIPDKVASEGIKSLLTISHAIVVQQAEEHKQKKKSDSAFKELEKKVVQLRSLESKYGPYSMPESSGTMRTKDPIVEKRAKVEALRGKAEEEKSKHEKSVNVTRAMTLNNLQMGCPHVFQGIVGFSSVCMEVFESVYNKAKVTEQEHDDYVPTVFDNFSANVVVNGSIVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFCTDHPGAVPITAAQGEELRKLINAPAYIECSSKTQENVKAVFDAAIRVVLQPPKQKKKKGKAQKACSIL* 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1116 800 ProSiteProfiles small GTPase Rab1 family profile. 595 800 - -
Apr7g1116 800 MobiDBLite consensus disorder prediction 72 100 - -
Apr7g1116 800 MobiDBLite consensus disorder prediction 64 129 - -
Apr7g1116 800 SMART ras_sub_4 608 783 - -
Apr7g1116 800 SMART rho_sub_3 608 783 IPR001806 GO:0003924|GO:0005525
Apr7g1116 800 PANTHER SERINE HYDROXYMETHYLTRANSFERASE, PUTATIVE (DUF632)-RELATED 1 627 - -
Apr7g1116 800 SMART rab_sub_5 638 783 - -
Apr7g1116 800 PANTHER UNCHARACTERIZED 1 627 - -
Apr7g1116 800 Pfam Ras family 633 781 IPR001806 GO:0003924|GO:0005525
Apr7g1116 800 Coils Coil 336 363 - -
Apr7g1116 800 PRINTS Transforming protein P21 ras signature 633 649 - -
Apr7g1116 800 PRINTS Transforming protein P21 ras signature 650 672 - -
Apr7g1116 800 PRINTS Transforming protein P21 ras signature 712 725 - -
Apr7g1116 800 PRINTS Transforming protein P21 ras signature 758 780 - -
Apr7g1116 800 ProSiteProfiles small GTPase Ras family profile. 592 800 IPR001806 GO:0003924|GO:0005525
Apr7g1116 800 Pfam Protein of unknown function (DUF632) 200 506 IPR006867 -
Apr7g1116 800 Gene3D - 611 795 IPR027417 -
Apr7g1116 800 ProSiteProfiles small GTPase Rho family profile. 594 780 - -
Apr7g1116 800 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Apr7g1116 800 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 631 781 IPR027417 -
Apr7g1116 800 CDD Rop_like 637 781 - -
Apr7g1116 800 TIGRFAM small_GTP: small GTP-binding protein domain 635 774 IPR005225 GO:0005525
Apr7g1116 800 Coils Coil 563 583 - -
Apr7g1116 800 MobiDBLite consensus disorder prediction 111 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1116 Apr-Chr7 18131300 18151150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g1116 1 62 Acyl Lipid Metabolism Gene Families AT2G27090 37.097 1.59e-08 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1116 - - aprc:113869576 1451.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1116 7 18131300 18151150 Apr7g1116 7 18131300 18151150 ECH