Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g1017 ATGTGGCGTTGCGTCGCTCGTGGACTTCGCGTTCCTTCTACTAACAGATCCACCTCACTTAGATCTCAACTTTCTAGATTCTTTTCTAGTGGGGTGAACTCGTCATACACTGTGGTGGATCATACTTATGATGCTGTTGTGGTAGGTGCTGGTGGTGCAGGACTTAGAGCTGCAATTGGACTTTCGGAGCATGGGTTCAATACTGCTTGCATTACTAAGCTCTTCCCAACTCGTTCACACACTGTTGCAGCTCAGGGTGGTATAAATGCTGCTTTGGGGAATATGACTGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGAGATCAGGATGCCATCCAATACATGTGTAGAGAAGCACCAAAAGCAGTCATTGAGCTAGAGAATTATGGATTACCATTTTCCCGAACAGAGGATGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCTTAAACTATGGAAAAGGTGGTCAAGCTTACCGCTGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTTTATGGCCAAGCTATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCATTGGATCTTTTAATGAATAGTGATGGCACTTGCCAAGGAGTAATCGCCTTGAATATGGAGGATGGAACACTACATCGTTTTCAAGCTGCTTCGACAATTTTGGCCACAGGGGGTTATGGTAGAGCGTACTTTTCTGCAACCTCAGCACATACATGCACTGGAGATGGCAATGCCATGGTTGCACGAGCTGGGATCCCTCTAGAGGATTTAGAGTTTGTGCAATTTCACCCAACGGGTATATATGGAGCAGGTTGTCTTATCACAGAAGGTTCTCGTGGTGAAGGTGGAATTCTTAGGAATAGTGAGGGTGAGCGATTTATGGAACGATATGCTCCTACTGCAAAGGATCTCGCATCAAGAGATGTAGTTTCAAGATCAATGACAATGGAGATTCGAGAAGGCCGCGGTGTAGGACCCCTAAAAGATCACATCTATCTTCACTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGAATCTCTGAAACTGCTGCTATTTTTGCTGGAGTGGATGTTACTAAGGAACCCATTCCTGTCTTGCCAACTGTACATTATAACATGGGTGGTATTCCTACAAACCATCATGGAGAGGTAGTTACCATTAAAGGTGACAATCCAGATGCCGTAGTTCCTGGATTGATGGCAGCTGGGGAAACAGCCTGTGCATCAGTCCATGGCGCTAATAGACTTGGTGCAAACTCACTTCTGGATATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCATAGGCCAGGAGAGAAACAAAAACCTTTAGAAAGGGATGCTGGTCAGAAAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGTTCATTGCCAACTTCAAAAATTCGGTTGAATATGCAACGAGTTATGCAAAGCAATGCTGCTGTATTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACATGGGAGAGCTTCCGTGATGTCAAGGTGGAGGACCGCACTTTAATATGGAACACTGACTTGATGGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCATGCATCACAATGCACTCAGCTGAAGCCAGGAAAGAGAGTAGAGGAGCTCATGCACGGGAAGACTTTACGACAAGAGATGATGAGAACTGGATGAAACACACTCTGGGATACTGGGAGAACGAGAAGGTCCGGTTGGATTACAGAGCAGTGCATTTAAACACATTGGATGACGAGGTTGAATCATTCCCTCCCAAGGCTCGTGTGTATTAA 1884 0.4421 MWRCVARGLRVPSTNRSTSLRSQLSRFFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNSDGTCQGVIALNMEDGTLHRFQAASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHHGEVVTIKGDNPDAVVPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLERDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQSNAAVFRTQETLEEGCQLIDKTWESFRDVKVEDRTLIWNTDLMETIELENLLINACITMHSAEARKESRGAHAREDFTTRDDENWMKHTLGYWENEKVRLDYRAVHLNTLDDEVESFPPKARVY* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g1017 627 SUPERFAMILY FAD/NAD(P)-binding domain 35 463 IPR036188 -
Apr7g1017 627 Coils Coil 627 627 - -
Apr7g1017 627 Gene3D - 44 451 IPR036188 -
Apr7g1017 627 PANTHER SUCCINATE DEHYDROGENASE [UBIQUINONE] FLAVOPROTEIN SUBUNIT, MITOCHONDRIAL 3 627 - -
Apr7g1017 627 TIGRFAM sdhA_forward: succinate dehydrogenase, flavoprotein subunit 41 627 IPR011281 GO:0006099|GO:0016627|GO:0050660
Apr7g1017 627 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 272 390 IPR027477 -
Apr7g1017 627 Gene3D - 467 577 - -
Apr7g1017 627 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 3 627 IPR030664 -
Apr7g1017 627 TIGRFAM sdhA_frdA_Gneg: succinate dehydrogenase or fumarate reductase, flavoprotein subunit 44 627 IPR014006 GO:0016627|GO:0022900|GO:0050660
Apr7g1017 627 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 282 385 IPR027477 -
Apr7g1017 627 PIRSF SDHA_APRA_LASPO 33 617 - -
Apr7g1017 627 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 486 627 IPR037099 GO:0016491
Apr7g1017 627 Pfam Fumarate reductase flavoprotein C-term 496 627 IPR015939 GO:0016491
Apr7g1017 627 Pfam FAD binding domain 44 440 IPR003953 -
Apr7g1017 627 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 78 87 IPR003952 GO:0016491
Apr7g1017 627 Gene3D succinate dehydrogenase protein domain 578 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g1017 Apr-Chr7 17207670 17214804 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g1017 K00234 - gmx:100818379 1199.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g1017 7 17207670 17214804 Apr7g1017 7 17207670 17214804 ECH
Apr7g1017 7 17207670 17214804 Apr3g0274 3 5388710 5400132 PCT