LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr7g0978	ATGCGGATGAACTTGAGGCAGTTCTTCTGCAAGGTTAACCTGTTCAACGGGTTAACCTTGCAAGTGCAAACTCGTTGCTATGCTCGTTGTCGTGACCCATTTCCTACCAAAGTTTCTCACTACCTAAACCGTGCCAAGTTCATTGACTCCATTCGACTCACTCTACGCTCCAATACCCTCAACTCCTCACTTCCTTCTCTCATAAACCACCGTCTCTTTGACTCTTTCGTGGTCACTCACGCACTGCGTTCTGCACCTTCTGCAGATTCCGCTCTCTCCCTTGTCGATGCCCTTGAAAAAAGTTCCCGTTTTTCGCATACCCACAACACACTCCATGCACTTGCCACTGTTCTTGCTAAGTCTGGTCGATGCGCTGACCTCAAATCTCTTGTTGATGCTATCCGAGCTAACCAGTTTGGCACTGTTCAGATTAGCTTTATGAATCTCATGCAGTGGCATGCTGCAGCTAGGGACCTTGACTCTGTTCTTCAAGTCTGGGATCAGTATAGACTTGAAAATGACAGTGTCTGCACTGAATCTTATAACATTGTTATGGCTCTTTATGCACACATGGGAAAGGACTCTGAGGCTGTTGGAGTTTTTCGCAGGATGATTGATGAAGGGTCGCTTCCTAATTGCAGAAGCTATACTGTAATAATCGAGCACCTTGTGAAATCCTTGAAATTGTCTGAAGCCATGGAGGTGTTTCACCTGTTGCCTTCAATGAGGATCAAACGCACTTTGAAACAGTACTCCGTTCTGATTGAAGGTTTCATGGGTAGCAAACGGTTTGATGAAGTCGGAATTTTGGTTGATGAAATGCAAGGTGATGGAATATTGCCTAGTAGAGGCTTGAGTTTGTTGCTACAGCAGATGCAGGAGGAAGGTATTCTTAAGGAGAAGGACCAATTATTTAGAGAAATTTTGCCCAATGAAAGAATCAAGAATGTGAGTTATTCTATTGATAGCGGTGATAAGGATGAGGATGAGGATGAGGATGAAGATGAAAATGAGGGAGAAGATGAGAAGATAAGTGGAGCTTGTCAATGTGATCAAGTTGATGGGATTCATTTAAAACCATGGCTGGATCCGCGGGCTTTGGCCAGTGCCTTGAAGAATTGGAGTCCTGATGAAGTAGCAGCACTAGAGGGTGCTGACTTTGTATGGACAACCAGGTTGGTTTGCAAGATGCTTAGAAATTTCAAAACACCAGAAGTTGCATGGAATTTCTTCTGCTGGGTTGCTAATCAACCTGGATTTACTCATGACAAATACACTATACAAAGAATCATGACCCTTTTAGCACGCCATGGACGTACTGAGTTGGTTGATAGACTCATCTCCAAGATCAGAATGGAGGGAATGAGACTACCATTCAGCACCATCAGGCTAATCATTGACTTTTATGGGATTTCAAAAAATGCTGATGCTGCTCTCAAGGTTTTCAATGATGATCGAAGACTTTGTGGGCCCATATCAAAAGTTAATCTTATGATTCTGTATTCCTCTCTTCTAAGAACATTAACAAAGTGTGGAAGAAATGCTGATGCCCTGGACATGCTTGATGATATGATTTTAAATGGTATTTGCCCAGATATCCAGACATTTTCAGGCCTCATGCGCTATTTTTCACACCTTGGAGACATAAAAACAGTGCAGAGACTCTTTGCAATGGTTAGGCAGAGCGGTCTAGAGCCAGATGCTTATTTGTTCAAGGTATTAATACAAGGTTATTGCAAGTCAAACAGAGCTGCACTTGCATGGAGGCTATTTGAAGACATGAAGAATTCAGGTCTGGTGCCTGACTCATCCACAAAAGAGTTGCTAGTGAAGAGCCTCTGGAAAGAGGGGAGACGCAGGGAGGCTGCAGCGGTGGAAGAGAGTTGCGAGGAAATAAATATGGTCCTTCCACTCGCATTGCAGGGTCATGTATGGACTGTCAGCTCTGCAGATCTCATAAGAGTTTATAATATTTATTCAAATTGTTTCGCTTAA	1995	0.4331	MRMNLRQFFCKVNLFNGLTLQVQTRCYARCRDPFPTKVSHYLNRAKFIDSIRLTLRSNTLNSSLPSLINHRLFDSFVVTHALRSAPSADSALSLVDALEKSSRFSHTHNTLHALATVLAKSGRCADLKSLVDAIRANQFGTVQISFMNLMQWHAAARDLDSVLQVWDQYRLENDSVCTESYNIVMALYAHMGKDSEAVGVFRRMIDEGSLPNCRSYTVIIEHLVKSLKLSEAMEVFHLLPSMRIKRTLKQYSVLIEGFMGSKRFDEVGILVDEMQGDGILPSRGLSLLLQQMQEEGILKEKDQLFREILPNERIKNVSYSIDSGDKDEDEDEDEDENEGEDEKISGACQCDQVDGIHLKPWLDPRALASALKNWSPDEVAALEGADFVWTTRLVCKMLRNFKTPEVAWNFFCWVANQPGFTHDKYTIQRIMTLLARHGRTELVDRLISKIRMEGMRLPFSTIRLIIDFYGISKNADAALKVFNDDRRLCGPISKVNLMILYSSLLRTLTKCGRNADALDMLDDMILNGICPDIQTFSGLMRYFSHLGDIKTVQRLFAMVRQSGLEPDAYLFKVLIQGYCKSNRAALAWRLFEDMKNSGLVPDSSTKELLVKSLWKEGRRREAAAVEESCEEINMVLPLALQGHVWTVSSADLIRVYNIYSNCFA*	665

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr7g0978	664	MobiDBLite	consensus disorder prediction	324	341	-	-
	Apr7g0978	664	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	497	531	IPR002885	-
	Apr7g0978	664	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	247	281	IPR002885	-
	Apr7g0978	664	TIGRFAM	PPR: pentatricopeptide repeat domain	571	603	IPR002885	-
	Apr7g0978	664	TIGRFAM	PPR: pentatricopeptide repeat domain	180	213	IPR002885	-
	Apr7g0978	664	TIGRFAM	PPR: pentatricopeptide repeat domain	500	533	IPR002885	-
	Apr7g0978	664	Pfam	PPR repeat family	566	613	IPR002885	-
	Apr7g0978	664	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	567	601	IPR002885	-
	Apr7g0978	664	Gene3D	Tetratricopeptide repeat domain	494	648	IPR011990	GO:0005515
	Apr7g0978	664	Gene3D	Tetratricopeptide repeat domain	80	350	IPR011990	GO:0005515
	Apr7g0978	664	Pfam	PPR repeat	215	241	IPR002885	-
	Apr7g0978	664	Pfam	PPR repeat	500	529	IPR002885	-
	Apr7g0978	664	Pfam	PPR repeat	251	279	IPR002885	-
	Apr7g0978	664	Pfam	PPR repeat	180	208	IPR002885	-
	Apr7g0978	664	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	177	211	IPR002885	-
	Apr7g0978	664	PANTHER	OS01G0167750 PROTEIN	3	663	IPR044175	-
	Apr7g0978	664	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	532	566	IPR002885	-
	Apr7g0978	664	Gene3D	Tetratricopeptide repeat domain	368	490	IPR011990	GO:0005515
	Apr7g0978	664	MobiDBLite	consensus disorder prediction	320	346	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr7g0978	419	649	Glycosyltransferase	AT1G05670	26.609	1.52e-14	75.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr7g0978	-		-	gmx:100779372	1068.14

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr7g0978	7	16850161	16852629	Apr7g0978	7	16850161	16852629	ECH