Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0762 ATGCGTGCCTCTACTTCGATCTTGAAGTCTTCATTTTCCATCGTCTCTTCCACTCTCAAGTATCAGTATCACTGTCGCACCAATCATTCCAAACCCTCGAAACCTGGATTGCCCTTTCGGAGAAAACCCGAATGCGACGACTCTCTGCTCCTTCACTATCTTACCAATGGGTGGCATCACGAAGCCCGAAAGCTCCTTCAAAATTCTTCAGAAGGAAACCTCCATGCCCGCATTGTTCGCTGGACCTCGTTGCTCACCCACTTCTCCCGACAGGGTTACGTAGCCGAAGCTCAAACACTGTTCGACATAATGCCCCACAGAAATATCGTCACTTGCAACGCAATGTTGTCGGGGTACCTTCGCTCCGGCATGTTTCATGAGGCTTCCCGGTTCTTCGAGTCCATGCCGGAGAGGAACGTCGTTTCTTGGACCGCTATGCTTAGTGGATATCCGGAGGCGGGGAGGATTGATGATGCTCGGAAGTTGTTTGATGTAATGCCGGAGAAGAATGTCGTTTCGTGGAACTCGATGGTGGCAGCGCTGATTAGGAATGGGGATTTGGAGGAAGCGAGGATGGTTTTTGAACAGATTCCTTGTAAAGATGTGGTTTCTTGGAATGCTATGATTGCGGGTTATGCTGAAAATGGTAGAATGGATGAAGCAAGAGCCTTGTTTTACAAGATGGAATTTAGGAATGTGGTTACTTGGACTAGCATGATATCTGGTTATTGCCATGCAGGCGATGTGGATGGGGCTTATTGTTTGTTTCGGGTTATGCCGGAGAACAATGTTGTTTCTTGGACTGCTATGATTGGGGGGTTTGCCTGGAATGGCTTCTGTGAAGAGGCATTGTTGCTTTTTCTTCAGATGAGAACGCTTTCAGATGCAAAACCCAATTTGGAGACCTTTATTTCTCTTGTTTATGCATGTGCTGGTTTGGGTTTTCCTTGCCTTGGCAAGCAGTTACATGCACAGCTGATGGTTAACAGCTGGGAGCTTGATGATTATGATGGTAGGTTGCGTAGAAGTCTTGTTAGGATGTACTCTGTGTTCGGTCTTATGGACTCTGCACACAATGTGTTTGATGGTAATGTGAGTAACTGCGATGAAAAATCTTTCAATTCTATGATCAATGGTTATGTTCAGGCAGGTCGGTTAGAAAAGGCTCAAGAGTTGTTTGACATGGTGCCTGTCCCAAATAAAATTGCATGGACTTGCATGATTGCTGGCTATCTTAGTGCTGGGCAAGTTCTGAAGGCGCAAAATCTGTTTAATAACATGCCTGATAGGGATTCCATTGCATGGACTTCAATGATTTATGGGTATGTCCAAAATGAGCTGATTGCTGAAGCCATCAGCTTATTTGCTGAAATGATAGCTCATGGTGTTTCTCCTATGAATTCTACATATAGTGTTCTTTTTGGAGCCATGGGTTCGGTTGCATATCTTGATCAGGGGCGACAGTTACATGGTTTGCAGTTAAAGACAGTGCATGAAAATGATTTGATTCTTGAAAACTCTCTAATTTCAATGTATGCAAAATGTGGGGAGATAGACGATGCATATAGGATGTTTTTTAACATGACTTACCGGGACAAAGTTTCTTGGAACTCCATGCTCATGGGCCTTTCAGATCATGGGAGGGCCAATGAAGCTTTAAAGCTATACGAAACTATGCTTAAATTTGGAGTTCATCCTGATGGCGTTACTTTCCTGGGTGCCCTAACAGCATGTGCTCATGCAGGTCTTGTTGATAAAGGGTGGGAGTTATTTACTGCCATGGTTAATGTTTATGCAATTCAACCTGGTCTAGAGCATTATATTAGTATTATCAATCTTCTGGGTCGAGCAGGGAAGGTGAAGGATGCAGAGGAGTTTGTTTTGAGGCTACCTGTTGAACCAAATCGTGCCATTTGGGGGGCACTGATTGGAGTTTGTGGGTTGAGTAAAACCGATGCAGATGTTGCTAGGCGTGCAGCTAAACGACTGCTCGAGTTGGATCCCTTAAATGCACCAGGCCATGTGGCCCTTTGTAACATATATGCCGCAAATGATAGACACACTGAGGAGACAAGCTTAAGAAAAGAGATGAGGATGAAGGGTGTGAGGAAAACACCCGGATGTAGTTGGATATTAGTGAAGGGTAGAGTTCATGTTTTTTATTCAGGAGATAGATTAGAACCACAAGTAGAAGAAATGTTGCTACAAATTTGA 2214 0.4431 MRASTSILKSSFSIVSSTLKYQYHCRTNHSKPSKPGLPFRRKPECDDSLLLHYLTNGWHHEARKLLQNSSEGNLHARIVRWTSLLTHFSRQGYVAEAQTLFDIMPHRNIVTCNAMLSGYLRSGMFHEASRFFESMPERNVVSWTAMLSGYPEAGRIDDARKLFDVMPEKNVVSWNSMVAALIRNGDLEEARMVFEQIPCKDVVSWNAMIAGYAENGRMDEARALFYKMEFRNVVTWTSMISGYCHAGDVDGAYCLFRVMPENNVVSWTAMIGGFAWNGFCEEALLLFLQMRTLSDAKPNLETFISLVYACAGLGFPCLGKQLHAQLMVNSWELDDYDGRLRRSLVRMYSVFGLMDSAHNVFDGNVSNCDEKSFNSMINGYVQAGRLEKAQELFDMVPVPNKIAWTCMIAGYLSAGQVLKAQNLFNNMPDRDSIAWTSMIYGYVQNELIAEAISLFAEMIAHGVSPMNSTYSVLFGAMGSVAYLDQGRQLHGLQLKTVHENDLILENSLISMYAKCGEIDDAYRMFFNMTYRDKVSWNSMLMGLSDHGRANEALKLYETMLKFGVHPDGVTFLGALTACAHAGLVDKGWELFTAMVNVYAIQPGLEHYISIINLLGRAGKVKDAEEFVLRLPVEPNRAIWGALIGVCGLSKTDADVARRAAKRLLELDPLNAPGHVALCNIYAANDRHTEETSLRKEMRMKGVRKTPGCSWILVKGRVHVFYSGDRLEPQVEEMLLQI* 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0762 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 532 566 IPR002885 -
Apr7g0762 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Apr7g0762 737 Pfam PPR repeat 403 430 IPR002885 -
Apr7g0762 737 Pfam PPR repeat 607 627 IPR002885 -
Apr7g0762 737 Pfam PPR repeat 141 171 IPR002885 -
Apr7g0762 737 Pfam PPR repeat 265 292 IPR002885 -
Apr7g0762 737 Pfam PPR repeat 506 529 IPR002885 -
Apr7g0762 737 Pfam PPR repeat 372 395 IPR002885 -
Apr7g0762 737 Pfam PPR repeat 172 200 IPR002885 -
Apr7g0762 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Apr7g0762 737 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 198 265 - -
Apr7g0762 737 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 265 724 - -
Apr7g0762 737 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 111 201 - -
Apr7g0762 737 PANTHER PENTATRICOPEPTIDE (PPR) REPEAT PROTEIN 25 111 - -
Apr7g0762 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 200 IPR002885 -
Apr7g0762 737 Gene3D Tetratricopeptide repeat domain 47 170 IPR011990 GO:0005515
Apr7g0762 737 Gene3D Tetratricopeptide repeat domain 503 729 IPR011990 GO:0005515
Apr7g0762 737 Gene3D Tetratricopeptide repeat domain 171 230 IPR011990 GO:0005515
Apr7g0762 737 TIGRFAM PPR: pentatricopeptide repeat domain 203 233 IPR002885 -
Apr7g0762 737 TIGRFAM PPR: pentatricopeptide repeat domain 372 394 IPR002885 -
Apr7g0762 737 TIGRFAM PPR: pentatricopeptide repeat domain 172 202 IPR002885 -
Apr7g0762 737 TIGRFAM PPR: pentatricopeptide repeat domain 141 172 IPR002885 -
Apr7g0762 737 TIGRFAM PPR: pentatricopeptide repeat domain 534 567 IPR002885 -
Apr7g0762 737 TIGRFAM PPR: pentatricopeptide repeat domain 434 465 IPR002885 -
Apr7g0762 737 TIGRFAM PPR: pentatricopeptide repeat domain 110 141 IPR002885 -
Apr7g0762 737 TIGRFAM PPR: pentatricopeptide repeat domain 234 265 IPR002885 -
Apr7g0762 737 SUPERFAMILY TPR-like 51 196 IPR011990 GO:0005515
Apr7g0762 737 Pfam PPR repeat family 431 477 IPR002885 -
Apr7g0762 737 Pfam PPR repeat family 107 140 IPR002885 -
Apr7g0762 737 Pfam PPR repeat family 532 579 IPR002885 -
Apr7g0762 737 Gene3D Tetratricopeptide repeat domain 231 313 IPR011990 GO:0005515
Apr7g0762 737 Gene3D Tetratricopeptide repeat domain 337 396 IPR011990 GO:0005515
Apr7g0762 737 Gene3D Tetratricopeptide repeat domain 397 488 IPR011990 GO:0005515
Apr7g0762 737 Pfam E motif 652 711 IPR046848 -
Apr7g0762 737 SUPERFAMILY TPR-like 152 689 IPR011990 GO:0005515
Apr7g0762 737 Pfam PPR repeat 201 229 IPR002885 -
Apr7g0762 737 Pfam PPR repeat 231 259 IPR002885 -
Apr7g0762 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 108 142 IPR002885 -
Apr7g0762 737 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 265 724 - -
Apr7g0762 737 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 111 201 - -
Apr7g0762 737 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 25 111 - -
Apr7g0762 737 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 198 265 - -
Apr7g0762 737 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 465 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0762 Apr-Chr7 14590507 14592730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0762 154 733 Glycoside Hydrolase AT3G49170 30.000 3.73e-83 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0762 - - gmx:102669560 1186.02