Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0758 ATGGCGCCAGTGTCAGCTCTTGCAAAGTACAAGCTGGTGTTCTTGGGTGATCAGTCTGTGGGCAAAACCAGCATCATCACGCGCTTCATGTATGATAAATTTGACAACACTTATCAGGCTACAATTGGTATTGATTTTCTATCAAAAACCATGTATCTTGAAGATCGAACTGTTCGGCTGCAGTTGTGGGATACAGCTGGACAGGAAAGGTTTAGAAGTCTTATTCCAAGCTACATTAGAGACTCGTCTGTTGCTGTCATTGTTTATGATATTGCAAGTCGTCAAACTTTCCTAAACACGCCAAAGTGGATTGAAGAGGTGCGCAGTGAGCGAGGCAGTGATGTTATTATTGTTCTTGTCGGGAACAAAACTGACCTTGTGGATAAGAGGCAAGTCTCTACAGAGGAAGCGGAAGCTACATCTCATGAATTAAACGTCATGTTTATTGAAGCTAGTGCCAAAGCTGGATTTAATATAAAGGCCCTCTTTCGAAAAATTGCTGGTGCATTACCTGGAATGGAAACACTATCTTCCACAAAACAAGAAGATATGGTTGACGTGAACCTAAGATCTTCTGGGGGCCATGATTCTCAACCTCAGTCGGATGGATGTGCCTGCTGA 621 0.43 MAPVSALAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDIASRQTFLNTPKWIEEVRSERGSDVIIVLVGNKTDLVDKRQVSTEEAEATSHELNVMFIEASAKAGFNIKALFRKIAGALPGMETLSSTKQEDMVDVNLRSSGGHDSQPQSDGCAC* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0758 206 PANTHER GTP-BINDING PROTEIN RAB6 1 206 - -
Apr7g0758 206 SMART rho_sub_3 12 173 IPR001806 GO:0003924|GO:0005525
Apr7g0758 206 CDD Rab6 10 170 - -
Apr7g0758 206 TIGRFAM small_GTP: small GTP-binding protein domain 9 166 IPR005225 GO:0005525
Apr7g0758 206 ProSiteProfiles small GTPase Rho family profile. 3 176 - -
Apr7g0758 206 SMART ras_sub_4 7 173 - -
Apr7g0758 206 ProSiteProfiles small GTPase Ras family profile. 5 206 IPR001806 GO:0003924|GO:0005525
Apr7g0758 206 SMART rab_sub_5 10 173 - -
Apr7g0758 206 PANTHER DRAB5-RELATED 1 206 - -
Apr7g0758 206 Pfam Ras family 11 168 IPR001806 GO:0003924|GO:0005525
Apr7g0758 206 ProSiteProfiles small GTPase Rab1 family profile. 5 206 - -
Apr7g0758 206 Gene3D - 6 200 IPR027417 -
Apr7g0758 206 PRINTS Transforming protein P21 ras signature 10 31 - -
Apr7g0758 206 PRINTS Transforming protein P21 ras signature 33 49 - -
Apr7g0758 206 PRINTS Transforming protein P21 ras signature 51 73 - -
Apr7g0758 206 PRINTS Transforming protein P21 ras signature 113 126 - -
Apr7g0758 206 PRINTS Transforming protein P21 ras signature 148 170 - -
Apr7g0758 206 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 181 IPR027417 -
Apr7g0758 206 SMART ran_sub_2 15 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0758 Apr-Chr7 14572787 14576866 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0758 10 166 EF-hand Containing Proteins AT3G63150 23.926 5.01e-06 44.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0758 K07893 - gmx:100527651 384.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0758 7 14572787 14576866 Apr7g0758 7 14572787 14576866 ECH