Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0756 ATGGACTCACAACAGAGCAATCTATTCGACACCGCTTCGCAACCCGACACGGGCAACGACGCCTACACCTTCCTCGAATTTAACACGCAGGGGGAAGATTTCGACTACCCCGAGTTCCGCGACCCTATTAGGTCACCCGTGGCATGGCCAACGCCCTCCGATTCGTTGGCTGACCCGTCCGAGCGCGGTGGTGGCGGCGGTGCCGGTTCCGATCACCAGTCCGACGCCTCGCCCGTTTCGGCGGCTCCCGGTAGCGCCACGAAAGGTCGGTCAGGGTCCAGTAGCGGAAACAGCCAGATGGTGGATGCTCTTGCGGCTGGGATGAGCGGGTTGAATTTTGAGGACACTGTTGATGATGATAATTACGAGTATGGTAAAGGAGATTTCACTGAACATGCTTGCCGTTATTGCGGGGTTTCTAATCCCGCATGTGTTGTGAGGTGCAATGTGCCCTCTTGTCGTAAATGGTTTTGTAATTCGCGGGGGAACACTTCGGGATCGCATATTGTGAATCACCTGGTTCGGGCTAAACACAAAGAAGTCTGCCTACATAAAGATAGTCCTTTGGGAGAAACAATTCTTGAATGCTACAATTGTGGGTGTCGTAATGTGTTTCTCCTTGGCTTTATTTCAGCAAAGACAGAAAGTGTAGTTGTTCTTCTTTGCCGTGAACCTTGCTTGAGTGTCAATGCCTTGAAGGACATGAATTGGGACCTTAGTCAATGGTGCCCCCTGATTGATGATAGGTGTTTCTTGCAGTGGCTTGTTAAGATCCCATCTGAACAGGAACAACTAAGGGCTCGCCAAATAAGTGCACAGCAAATAAATAAGGTTGAAGAGTTGTGGAAGACAAATCCGGATGCTTCTTTTGAGGACCTTGAGAAGCCTGGGGTAGATGATGAACCTCAGTCTGTGGCTTTGAAATATGAAGATGCATATCAGTATCAAAATGTATTTGCACCTCTCATAAAGCTTGAAGCTGATTACGATAAGATGATGAAAGAATCACAAAGCAAGGACAATGTCACAATTCGATGGGATATTGGTCTTAATAAGAAGCGTGTTGCCTACTTTGTCTTTCCAAAGGAAGATAATGAGTTGCGGCTTGTACCTGGTGATGAATTACGACTGCGTTATTCTGGTGATGCTGCACATCCTGCGTGGCAGTCAGTGGGTCATGTGATTAAGTTAACTGCACAAGAGGAGGTTGCATTGGAGCTTCGTGCTAGTCAGGGGGTTCCAGTTGATGTTAACCATGGTTTCAGTGTTGATTTTGTCTGGAAAAGTACAAGCTTTGATAGAATGCAGGGAGCTATGAAAACCTTTGCTGTTGATGAGACAAGTGTTAGTGGGTATATTTATCATCACTTATTGGGTCATGAAGTTGAGGTTCAGATGGTGCGTAATGCACTGCCTCGTCGCTTTGGTGCACCTGGTCTTCCAGAGCTGAATGCATCTCAAGTTTTTGCTGTCAAGAGTGTTCTTCAGAGGCCTATTAGTTTGATTCAAGGACCACCTGGAACTGGTAAGACTGTAACTTCTGCAGCACTCGTATATCACATGGCCAAACAAGGTCAGGGACAGGTATTGGTTTGTGCACCCAGTAATGTAGCTGTAGACCAGCTGGCTGAAAAGATAAGTGCTACTGGATTAAAGGTTGTGAGGCTTTGCGCAAAGTCAAGGGAAGCTGTGAGTTCACCTGTTGAACATTTGACTCTCCACTATCAGGTTCGACATCTTGACACATCTGACAAGAGTGAACTTCACAAATTGCAACAGCTTAAGGATGAACAAGGTGAACTTTCTAGCAGTGATGAAAAAAAGTATAAAGCGCTTAAACGAGCAACAGAGAGGGAGATTTCTCAGAGTGCTGATGTGATCTGCTGTACATGTGTTGGTGCTGGAGATCCTCGTCTTGCTAATTTTAGGTTCCGTCAGGTACTCATTGATGAGTCCACTCAAGCAACTGAACCTGAATGCCTTATACCTTTGGTTCTTGGAGCAAAGCAGGTTGTTCTTGTTGGTGATCATTGTCAGCTTGGTCCTGTTATTATGTGCAAGAAAGCAGCTCGTGCAGGGTTAGCACAGTCACTTTTTGAACGTCTTGTTCTACTTGGTGTCAAACCAATTAGGTTGCAGGTTCAGTACCGTATGCATCCATGCCTTTCGGAATTTCCCTCAAACAGTTTTTATGAAGGCACTCTGCAAAATGGAGTCACTGTTAATGAGAGACAATCTTCAGGAATTGATTTTCCATGGCCTGTACCAAACCGTCCCATGTTTTTTTATGTTCAGATGGGACAAGAAGAGATAAGTGCTAGTGGAACATCTTATTTAAATAGGACTGAGGCTGCAAATGTTGAAAAGATTGTCACTACTTTCTTAAAAAGTGGTGTGGTTCCTAGTCAGATTGGTGTAATAACACCTTATGAGGGACAAAGAGCTTATATTGTGAACTATATGTCAAGAAATGGTGCTCTCAGGCAGCAGCTTTACAAGGAAATTGAGGTTGCTAGTGTTGATTCCTTTCAAGGAAGGGAGAAAGACTACATCATTCTCTCTTGTGTTAGAAGTAATGAACATCAGGGCATTGGATTCCTGAATGATCCTAGGAGGCTGAATGTTGCTTTGACACGAGCAAGATATGGTATTGTTATTTTGGGAAACCCTAAAGTTCTGAGCAAGCAGCCTCTATGGAATAGCTTATTGACTCACTACAAGGAGCATGAGTGCTTAGTTGAAGGGCCTTTAAATAACTTGAAGCAAAGTATGGTTCAGTTCCAGAAACCCAAGAAGATTTACAATGAACGAAGGCTGTTTTATGGGGGTGGACCTGGAATTGCGGCTAATGATAATTTTGGTTCTGTTGGCTCTGGAGCTGGCACCAGTTCAGATCGAAGGAGCAGCCGGGGAAGGGGATCTTATATACCTCCTGGTCCCCCAAATGGAACTCATAAGCCCGGAGTGCATCCTGCTGGATATCCTGTGCCAAGGGTTCCCCTGCCCCACTTTCATGGTGGTCCCCAATCTCAACCATATGCCATTCCATCTCGTGGGGCTGTTCATGGACCCGTTGGGGCAGTTCCTCATGTTCCTTCTCCTGGGAGTCGTGGTTTTGGGGCTGGGAGAGGCAATTCTGGTGCTCCAATTGGCAATCATCTTCCCCACCAACAAGGCACTCAACAGCCTATTGGGAATATTGGATCTACATTTAACTTCCATGCTCTAGAGAATCCTAACAGCCAGCCATCTGTTGGCGGTCCATTATCTCAACCTGGCTTTGCCAATAATTCATTTCGAGATCAATTTTCTGTGCCTGGAATGTCTCAGGACTTCTTGGGGGATGACTTCAAAAGCCAGGGATCTCATGTTCCTTACAATGTCACTGATTTTTCTACACAGGCTTCTCAAAGTGGATATGCTGTTGATTATGCTACACAAGGAGCACAAGGTGGATTCCCAGGGAACTTTCTTAACCAGAATTCTCAAGCTGGATATTCACGTTTTGGCTCTGGAAACGACTTTATGTCCCAGGACTACATGGGCCATGGATCACAAGGTCTTTTCACTCAGGTTGGATTCAACGATCCCTTGCAAGATGAGGCAACACAGAGCCATTTCAGTGTGGGAAATGCCAACCCTCTTCAGTCCCAGATGAATTCTCTCTACTCCCAGCCTTTTGCCCACTACAACACTCAGCCGCTTAACATGCAGGCTTCGCAACAGCAGCCTCAGGGTCAGAACTCCCAAAATCAGAAAATTCACTACAACGGTTGA 3777 0.458 MDSQQSNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADPSERGGGGGAGSDHQSDASPVSAAPGSATKGRSGSSSGNSQMVDALAAGMSGLNFEDTVDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKVEELWKTNPDASFEDLEKPGVDDEPQSVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVDVNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNALPRRFGAPGLPELNASQVFAVKSVLQRPISLIQGPPGTGKTVTSAALVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSDKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPCLSEFPSNSFYEGTLQNGVTVNERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLKSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNERRLFYGGGPGIAANDNFGSVGSGAGTSSDRRSSRGRGSYIPPGPPNGTHKPGVHPAGYPVPRVPLPHFHGGPQSQPYAIPSRGAVHGPVGAVPHVPSPGSRGFGAGRGNSGAPIGNHLPHQQGTQQPIGNIGSTFNFHALENPNSQPSVGGPLSQPGFANNSFRDQFSVPGMSQDFLGDDFKSQGSHVPYNVTDFSTQASQSGYAVDYATQGAQGGFPGNFLNQNSQAGYSRFGSGNDFMSQDYMGHGSQGLFTQVGFNDPLQDEATQSHFSVGNANPLQSQMNSLYSQPFAHYNTQPLNMQASQQQPQGQNSQNQKIHYNG* 1259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0756 1258 MobiDBLite consensus disorder prediction 955 970 - -
Apr7g0756 1258 MobiDBLite consensus disorder prediction 1 99 - -
Apr7g0756 1258 PANTHER DNA2/NAM7 HELICASE FAMILY 108 1034 IPR045055 -
Apr7g0756 1258 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Apr7g0756 1258 Pfam AAA domain 582 685 IPR041677 GO:0004386
Apr7g0756 1258 CDD 1B_UPF1-like 338 425 IPR040812 -
Apr7g0756 1258 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184|GO:0003723|GO:0003724|GO:0005524|GO:0005737|GO:0008270
Apr7g0756 1258 CDD DEXXQc_UPF1 482 717 - -
Apr7g0756 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 941 IPR027417 -
Apr7g0756 1258 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Apr7g0756 1258 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
Apr7g0756 1258 Gene3D - 446 716 IPR027417 -
Apr7g0756 1258 CDD SF1_C_Upf1 718 907 IPR041679 -
Apr7g0756 1258 MobiDBLite consensus disorder prediction 951 999 - -
Apr7g0756 1258 Pfam AAA domain 695 890 IPR041679 -
Apr7g0756 1258 MobiDBLite consensus disorder prediction 1 26 - -
Apr7g0756 1258 MobiDBLite consensus disorder prediction 1238 1258 - -
Apr7g0756 1258 MobiDBLite consensus disorder prediction 73 99 - -
Apr7g0756 1258 PANTHER REGULATOR OF NONSENSE TRANSCRIPTS 1-LIKE PROTEIN 108 1034 - -
Apr7g0756 1258 Gene3D - 338 426 - -
Apr7g0756 1258 Gene3D - 568 620 - -
Apr7g0756 1258 Gene3D - 717 928 IPR027417 -
Apr7g0756 1258 Pfam Type III restriction enzyme, res subunit 488 550 IPR006935 GO:0003677|GO:0005524|GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0756 Apr-Chr7 14548125 14559724 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0756 K14326 - gmx:100795594 2444.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0756 7 14548125 14559724 Apr7g0756 7 14548125 14559724 ECH