LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Apr7g0749	ATGGCTCTAACACTTCGTTCTTCAATTTCTTTCGTTAATCAGAAAGAAACCAAAGTCCCAAAAGCAAAAGATGAAGTTTTAACCAAAGTTCACTTTGCAAAAACTAAGTCGTATTTTCGTCTCCGAGCAAAGAGTTCCACGCAAGAAGCACATGTCACACGGGACAACAATTTCAACTCTGAAGTGATGATAAACGAGAAATGGGAAACGGTTCATGCACCATCGGTTTCTCATAGCCACAACGATTCTATGAGAGTGCCCGTGTTTGTGATGTTGCCATTGGACACTGTAACAATGGGAGGGAATTTGAATAAGCCAAGAGCAATGAATGCTAGTTTGATGGCTCTGAAGAGTGCAGGAGTGGAAGGAGTAATGGTGGATGCTTGGTGGGGTTTGGTGGAAAAAGAGGGTCCTTTGAAGTATAACTGGGAAGCCTATGCTGAACTTGTGAAGATGGTACAAAGGCATGGCTTGAAGCTTCAGGTTGTCATGTCTTTCCATCAATGTGGAGGGAATGTTGGAGACTCATGCAGCATTCCTCTACCTCCATGGGTGCTGGAAGAAATCAGCAAGAACCCTGACCTGGTTTACACAGACAGATCAGGGAAGAGGAATCCTGAGTACATCTCCTTGGGCTGTGATTCAATTCCAGTTCTGCGAGGAAGGACGCCCCTTCAAGTTTACTCCGATTACATGAGGAGCTTCCGTGACAGATTCAGAGATTATTTGGGTAGTGTTATCATAGAAATTCAAGTGGGGATGGGTCCTTGTGGGGAGCTGAGATATCCATCTTATCCAGAAAGCAATGGAACTTGGAGGTTTCCTGGAATTGGAGAATTCCAGTGCTACGACAAGTATATGAAAGCTTCCTTGGAAGCATCAGCTGAGGCCATTGGGAAGAAAGACTGGGGAAGAAGTGGACCCCATGACTCAGGTCAATACAACCAATATCCTGAAGATACTGAATTTTTCAAAAGGGAAGGAACATGGAGCACTGAATATGGACACTTCTTCCTTGATTGGTACTCCAGCAAATTGATTCAACACGGTGAGAGGATCCTTGTGTCAGCCAAAAGCATATTCCAAACACATGGTGTGAAACTATCTGCCAAAGTAGCTGGAATCCATTGGCATTACAAAGCAAGGTCACATGCAGCTGAACTAACTGCAGGCTACTACAACACACGATTTCGTGATGGTTATCTACCAATAGCACAAATGTTGGCAAAACATGGAGTTGTGTTGAACTTCACCTGCATGGAAATGAGGGACAGAGAGCAACCTCAACATGCTAACTGTTCCCCTGAAGGATTAGTTCATCAAGTGAAGATGGCAACTAAGACAGCAAGAGCAGAACTTGCTGGAGAAAATGCATTGGAGAGATATGATGAAGGTGCATTTGCTCAAGTTGTGTCAACTAGTAACTCTGGCTGTGGATTAACTGCATTCACTTATCTTAGAATGAATAAGAGGTTGTTTGAAGGAGATAATTGGCGGCATTTAGTGGAATTTGTAAAAGCCATGTCTCAAGGTGGTCGGAGACAAAGGCTCCCACATTCTGATTCTTATGGGACTGATCTTTATGTTGGCCACATCAAAGGAATTCAGAAGCAGCGAGTTCAAGAGGTTACTCTTGTGTGA	1641	0.4369	MALTLRSSISFVNQKETKVPKAKDEVLTKVHFAKTKSYFRLRAKSSTQEAHVTRDNNFNSEVMINEKWETVHAPSVSHSHNDSMRVPVFVMLPLDTVTMGGNLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKEGPLKYNWEAYAELVKMVQRHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDRSGKRNPEYISLGCDSIPVLRGRTPLQVYSDYMRSFRDRFRDYLGSVIIEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMKASLEASAEAIGKKDWGRSGPHDSGQYNQYPEDTEFFKREGTWSTEYGHFFLDWYSSKLIQHGERILVSAKSIFQTHGVKLSAKVAGIHWHYKARSHAAELTAGYYNTRFRDGYLPIAQMLAKHGVVLNFTCMEMRDREQPQHANCSPEGLVHQVKMATKTARAELAGENALERYDEGAFAQVVSTSNSGCGLTAFTYLRMNKRLFEGDNWRHLVEFVKAMSQGGRRQRLPHSDSYGTDLYVGHIKGIQKQRVQEVTLV*	547

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Apr7g0749	546	ProSitePatterns	Beta-amylase active site 1.	167	175	IPR018238	GO:0000272\|GO:0016161
	Apr7g0749	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	120	134	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	141	159	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	163	184	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	255	277	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	330	349	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	366	382	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	383	394	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	401	424	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	438	460	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	SUPERFAMILY	(Trans)glycosidases	85	511	IPR017853	-
	Apr7g0749	546	PANTHER	-	1	546	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	PANTHER	BETA-AMYLASE	1	546	-	-
	Apr7g0749	546	Pfam	Glycosyl hydrolase family 14	89	504	IPR001554	GO:0000272\|GO:0016161
	Apr7g0749	546	Gene3D	Glycosidases	78	540	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Apr7g0749	Apr-Chr7	14358427	14363406	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Apr7g0749	1	546	Glycoside Hydrolase	AT4G17090	71.220	0.0	834

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Apr7g0749	K01177		-	gmx:100786079	979.933

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Apr7g0749	7	14358427	14363406	Apr7g0749	7	14358427	14363406	ECH