Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0682 ATGAATAGTCAGAAGGATAAGGCCGAAGATAGGGACGTGATTATAGCAAAGGGTGATAAAGAAGATGAGTCATTTTCTGGCTTTCATGGATTGACGATAGACTTCGGTAGTGATAAGAGTAAGACCAAAACTTTTCATCCTCCGATTGAAACGCATTGGGATCTTCCTTCATCACAAAGAAGAAAGGATTCTTCTTCCCACCTGAAGTCACTGTTGTCTTTCCCGCTCAAGAAATTTAGAAGGAATAAAAGCCTGAAAATGATTCTAGAAGGAGCTCGTGATCCCAAAGATAATCAAATTGTGGAGTCTTTTCGTGAAATGCTTTTACAAGAGGGTCTTTTGCCACCTAAGCACGATGATTATCATACTCTTTTGAGGTTTCTGCGCATGAGGGATTTCGACATGCCAAAATCCAAGGATATGTTTCAGAATTATCTGAAATGGCGCAAGGAATTTCGAGTAGATAAGCTGGCTGAGGAATTCAAATTCACGGAGTACAATGAAGTGAAGAAATGCTATCCTCATGGATTCCACGGGGTTGACAGATTTGGCAGACCCGTGTATATTGAGAGAATTGGGATGGTAGACCTTAACAAACTAGCGCAAGTAACCACATTTGAAAGGTTTATAAAGTATCATGTGTCAGAACAAGAGAAAACTCTTAAAGTAAGATTTCCTGCATGTTCACTGGCTGCTAAAAGGCACATAGCATCCACTACAAGTATCTTGGATGTCAACGGAGTAGGAATGTCTAATTTCTCAAAGCCCGCAAGATACCTCTTTATGGAAATTCAGAAGATCGATAGCAGTTACTATCCTGAGACACTAAATCAGCTCTTCATTATTAATGCCGGATCTGGGTTTAGGATGCTGTGGAAAGCAGTAAAGACATTCCTAGATGTACGCACAGTAGCAAAAATTCAAGTGTTGGGTTCTAGTTATCTCAATGTGCTGCTTGAGGCTATAGATCCGAGTAATTTGCCAATGTTTCTGGGTGGCAACTGCACATGTTCTGATTATGAAGGCTGCATGATGAGTGATCGAGGGCCCTGGAAAATTCCAGAAGTGCTAGAAATGATTCAGGTTGTTAACTTGAGAGAAGAGATCGACGGTAATGCGGCTTCAGAAGATTCCTTGAGAGAAGAGATCGATGGTAAATGTGAAGTCAGTAATGTGGCTTCAGAATATTCCTTGATGCCCAATAAAGTTGACATGCAAAACAAAGATGACTATACTATGAGTCTACTTGAGGAGGCGGCATGTGCAGGATCAGACTCGGCATGTAGGTCAGCATTACAAAAAATTGACTGTCTTGAAGCTGTTCTTGGAGACACCAAGAATAAAATCAAGAAGCTGGAAGACGCACTTCAGGACACCAGGATGGCCTTGAAGGAACTTGCACAGCTTATAGAACAGCCGAAAATGTAA 1428 0.4118 MNSQKDKAEDRDVIIAKGDKEDESFSGFHGLTIDFGSDKSKTKTFHPPIETHWDLPSSQRRKDSSSHLKSLLSFPLKKFRRNKSLKMILEGARDPKDNQIVESFREMLLQEGLLPPKHDDYHTLLRFLRMRDFDMPKSKDMFQNYLKWRKEFRVDKLAEEFKFTEYNEVKKCYPHGFHGVDRFGRPVYIERIGMVDLNKLAQVTTFERFIKYHVSEQEKTLKVRFPACSLAAKRHIASTTSILDVNGVGMSNFSKPARYLFMEIQKIDSSYYPETLNQLFIINAGSGFRMLWKAVKTFLDVRTVAKIQVLGSSYLNVLLEAIDPSNLPMFLGGNCTCSDYEGCMMSDRGPWKIPEVLEMIQVVNLREEIDGNAASEDSLREEIDGKCEVSNVASEYSLMPNKVDMQNKDDYTMSLLEEAACAGSDSACRSALQKIDCLEAVLGDTKNKIKKLEDALQDTRMALKELAQLIEQPKM* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0682 475 SMART sec14_4 165 336 IPR001251 -
Apr7g0682 475 SUPERFAMILY CRAL/TRIO N-terminal domain 94 160 IPR036273 -
Apr7g0682 475 CDD SEC14 163 334 IPR001251 -
Apr7g0682 475 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 37 472 - -
Apr7g0682 475 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 165 339 IPR001251 -
Apr7g0682 475 PRINTS Cellular retinaldehyde-binding protein signature 123 145 - -
Apr7g0682 475 PRINTS Cellular retinaldehyde-binding protein signature 292 311 - -
Apr7g0682 475 PRINTS Cellular retinaldehyde-binding protein signature 325 334 - -
Apr7g0682 475 Gene3D - 153 365 IPR036865 -
Apr7g0682 475 Gene3D - 76 152 - -
Apr7g0682 475 SMART CRAL_TRIO_N_2 120 145 IPR011074 -
Apr7g0682 475 SUPERFAMILY CRAL/TRIO domain 165 360 IPR036865 -
Apr7g0682 475 Pfam CRAL/TRIO domain 173 333 IPR001251 -
Apr7g0682 475 PANTHER PHOSPHATIDYLINOSITOL/PHOSPHATIDYLCHOLINE TRANSFER PROTEIN SFH11 37 472 - -
Apr7g0682 475 Coils Coil 435 472 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0682 Apr-Chr7 13646694 13650454 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0682 124 330 Acyl Lipid Metabolism Gene Families AT5G47730 30.144 1.92e-21 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0682 - - gmx:100797170 714.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0682 7 13646694 13650454 Apr7g0682 7 13646694 13650454 ECH