Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0625 ATGGATGATGACCTCTCTCATGAGCACAAAGTGCCATCTTGTGTCATAAAAGCAATACAGTTTGATGTTTTAACCAAGGAAGATATAGAGAAGAATGCTGCATTGGAGATAAATGCGGTTGGGCAGGTCACTTGTTCAAGTTTGGGACTTCCAAATACATCTGATGAGTGCACCACATGTGGTTCTAAAGACAGAAAATTTTGTGAAGGTCATTTTGGGGTCATCAAATTTCCTTTTGCTATACTCCATCCATATTTTATGTCAGAGATTGCACAAATCTTGAACAGGATTTGCCCTGGTTGTAAATCTATTCGGCAGAAATCCAAGAGTGCTCAATTAATCTCTGGAATCAAGCAGCACAATGGTTGCAAATATTGTTGTGGATATGGTCGATATCCAGCAATGAAATTCAGAGTTTCCTCTAATGATCTCTTCAGAAGAACTGCAATTATTGTTGATATAAATGACAAGGCCTCAAAGAAGAAACCTTTGGCACGAAGATTGCCTGCTGATTATTGGGATTTTATTCCTAATGATGGTCAACAAGAAGAAACTTGTGTAAATAGAAGGGTTTTATCACCTGTTCAGGTTCATTATTTGTTGAGTGGTGTTGATACAAACTTCATCAAACAATATGTTCCAAGAATGGATTTTCTCAGTCTTAATTGCTTCCCGGTGACACCAAATTGTCATCGTGTGACAGAAATTGTTCATGCATTGTCTAATGGGAACCGATTGAGTTTTGATGACAGGACTAGAGCTTGTAAGAAATTGGTTGATTTCAGGGGTACAGCTAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTGAGGATCTCTAAGGCATTTAGTATTTTTGCCGATATTCAGCAAAGAAAGGTTGCAGAAAATGCTTGCAATTCTTCTGGTTTAAGATGGATAAAAGATGTGGTTCTAGGAAAGCGCAATGATAGTTCATTCCGTACAGTGGTTGTTGGTGATCCAGACCTTGAACTTAGTGAAATTGGTATACCTTGTCAAGTTGCAGAAAGTTTGCAGGTTTCTGAGTATGTGAATAGGCATAATAAGGAAAGGTTGTTGTATTGTTGTGAGCTACGCTTGTTAGAGAAGGGACAAATAGATGTCTGCAGAAAGGGTAGCCCAGTTGTTCTGTATAGAAAGGAAGATGTACAGATAGGAGACATATTTTATAGGCCTCTAAGTGATGGGGATAAAGTGCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACAGTTAGGGTCCTTCCAATATCTTCTGTAGTGTCTATTAATCCACTCTGTTGTTCCCCATTACGTGGTGATTTTGATGGTGATTGCCTTCACGGGTATATTCCACAATCAGTCTGTGCAAGAGTTGAGCTTAATGAGCTGGTTGCTTTAGATGAGCAATTGATTAATGGGCAAACTGGTATAAATCTACTTTCACTCTCTCAAGACAGCTTAACTGCTGCATATTTATTGATGGAAGATGGGGCCCTTTTGAATGTGTATGAAATGCAACAACTTCAAATGTTGTGCAATAAAAAATTAACACCACCTGCAATTGTAAAAACCCCTTTAAGTAATAGCTCATTTTGGAGCGGCAAGCAATTGTTCAGTATGCTCTTGCCTTCTGATTTTGACTATTCTTTTCCTTCAGATGGTGTTTTTGTTAGTGGAGGAGAGCTTGTATCTTCTTCTGAGGCTTCGGGTTGGTTACGTGATTTTGACAGCAATGTGTTCCAGAGTCTTGTGGAACTTTTTCAAGGAAAGACTCTGGACATTTTGTATGCTGCACAGAAAGCTCTTTGTGAGTGGTTGTCTATGACAGGTTTTAGTGTTTCACTCTCAGACTTGTACCTTTCTTCTGATTCCTATGCACGAAAAAACATGATGAACGAAATCTCATATGGCTTACAAGAAGCAGAACAGGCATGCAATTTCAAACAGTTATTGGTGGATTATTATTATGATTTTCTGTCAGGGAGTCTTGAGGAGAGTGAAAATGTTATCCCTGTTGATGTGGACCGTCTGAATTATGAAAGGCAAATATCTGCTGCTCTCAGTCAAGTGTCAGTTGATGCTTTTAGGCAAGTTTTTCGCAGTATTCAAAGTTTAGCTGACAAATATGCATGCAAAGACAATACTTTCCTTGCTATGATTAAGGCTGGAAGCAAGGGTAATTTGCTGAAATTAGTGCAACATTCCATGTGCCTTGGCCTGCAAAATTCTCTGGTTCGCTTGTCATACCGAATTCCCCGTCAACTTTCATGTGCTGCTTGGAATAGTCAAAAGGAGCTTGATTCAATCCAGATGTTTTCTGGTACCCTTGAATCTGTTCAGTCTTACATTCCATATGCGATGATTGAAAGCTCGTTTCTGACTGGGTTGAATCCTCTTGAATGTTTTGTTCATTCAGTGACAAATCGTGATAGCTCTTTCAGTGACCATGCAGACCTTCCTGGAACATTGACACGGAGACTTATGTTCTTCATGCGTGATTTGTATGATGCATATGATGGAACAGTGAGAAATTTGTACGGTGATCAAATTATTCAGTTTTCTTATGATATTGAGGACTCTTCTAGTGATAGCAGTTTCCAAGAGTATACTATGGGTGGTGAATCAGTTGGAGCACTTTCTGCTTGTGCAATTTCGGAAGCTGCATACAGCGCTTTGAGTCAACCAGTTAGTCTACTTGAAACATCACCTTTGCTGAATTTAAAAAAGGTTCTGGAGTGTGGTTCAAAGAGAAGAGGTGGTGAACAGACTGTGTCTTTATTTTTGTCTGAGAAACTTGGTAAACAGAGACATGGGTTTGAGTATGCAGCCCTAGAAGTAAAGAATTATTTGGAAGGATTGATGTTCTCAAATATTGTTTCTACTGTGATGATAATATACGTCCCACAGTCTTGTAGCCAGGAAAAGTACAGCCCTTGGGTTTGCCATTTTCATTTAGACAAGGAAATTGTAATGAGAAGAAAATTGAAAGTGCATTCTATCACTGACTCTCTTTACCAACGATATGACTCCCACAGAAAAGGATCAAAAGTCAGTTTTCCCAATTTGAAAATATCAAGCAAGAAGTTTTCTGCTGATTCCATGGGCAAGGAGGATGAAGATACTTCTGTAGATAGAGAAAAGGGGGGTGATGATTGCATCACAGTCTCAATCGTTGAAAACTCTAAGAATCCTATACAACTGGACTCTGTTCGGGACTTGATGGTACCTTTCCTTCTAGGAACATCTATAAAAGGATTTCTGGAGATCAAGAAGGTTGATATTCAATGGAATAATCTGTCAAAAGGAACACATTCTTATAATGGTTCTTCTGGTGAACTGTACTTGAGGGTAACTATGTCTAGTGATGGTAGCAGGGGAAGATTCTGGGGTGTACTCATAAGTCATTGTCTCAAGATAATGCACCTAATTGACTGGACACGAAGTCGGCCAGATAACATAAATCATTTCTCATCAGCATATGGAATTGATGCAGGGTGGCAATGTTTTCTCAATAATTTGGCATCTGCAACATCCGACACTGGCAAGTCAATCCTTCCTAAGCATCTGCGTCTTGTGGCCAATACTCTGTCAGCTAGCGGAGAGTTTGTGGGATTAAATGCAAAAGGCATGGCACGGCAGAGAAAACATGCATCTGTTTCATCACCCTTTGTGCAAGCATGCTTTTCTAATCCAGGTAGTTCCTTCATAAAAGCTGCCAAGACTGGAGTCATGGATAACCTCCAGGGCTGCCTAGATGCTCTGGCTTGGGGAAACTGCATGTCCATGGGGACAAGTGGACAGTTTGATATCATATACTCAGAGAAGGGACATGAGGTAACTAAGTCTGCAGATGTATATAACCTGCTAGCAGCCAGTATTGACAAGCTTAACGATAAGATCATCACTCCTCATTCTCACAATTATTCATCTGACAAATTTGGTTCTGAGTTTAGGCCTAAAAATGGTGGTTATTCCTTGAAAGAGAGTAAACAGTGGAAAAACATTTTAAGAAATTTTGTGACAGTAAATGATATTCAGAAACTGACTTCTGCATCGAGGTGCATATTGAACAAGTATTCAATTGATGAGCTACTAAGTGAGAGGGATAAGCTAACAATGCTAAAGGTTTTGCGTTTTCATCCCTGTAAAAATGAGAAATTTGGTACTGGAGCACGGGACATAAAGGTTGGATGGCATCCTAAACATAAGGATAGCCGCTGCTTCCATATAGTACGAACTGACGGGACTGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGAGATTGTTGATCCAGAAAAGTCAAAGATCCAGAAGAAAAAATGGTTGGGACATGGTGACATATGA 4371 0.3956 MDDDLSHEHKVPSCVIKAIQFDVLTKEDIEKNAALEINAVGQVTCSSLGLPNTSDECTTCGSKDRKFCEGHFGVIKFPFAILHPYFMSEIAQILNRICPGCKSIRQKSKSAQLISGIKQHNGCKYCCGYGRYPAMKFRVSSNDLFRRTAIIVDINDKASKKKPLARRLPADYWDFIPNDGQQEETCVNRRVLSPVQVHYLLSGVDTNFIKQYVPRMDFLSLNCFPVTPNCHRVTEIVHALSNGNRLSFDDRTRACKKLVDFRGTANELSSRVLDCLRISKAFSIFADIQQRKVAENACNSSGLRWIKDVVLGKRNDSSFRTVVVGDPDLELSEIGIPCQVAESLQVSEYVNRHNKERLLYCCELRLLEKGQIDVCRKGSPVVLYRKEDVQIGDIFYRPLSDGDKVLINRPPSIHQHSMIALTVRVLPISSVVSINPLCCSPLRGDFDGDCLHGYIPQSVCARVELNELVALDEQLINGQTGINLLSLSQDSLTAAYLLMEDGALLNVYEMQQLQMLCNKKLTPPAIVKTPLSNSSFWSGKQLFSMLLPSDFDYSFPSDGVFVSGGELVSSSEASGWLRDFDSNVFQSLVELFQGKTLDILYAAQKALCEWLSMTGFSVSLSDLYLSSDSYARKNMMNEISYGLQEAEQACNFKQLLVDYYYDFLSGSLEESENVIPVDVDRLNYERQISAALSQVSVDAFRQVFRSIQSLADKYACKDNTFLAMIKAGSKGNLLKLVQHSMCLGLQNSLVRLSYRIPRQLSCAAWNSQKELDSIQMFSGTLESVQSYIPYAMIESSFLTGLNPLECFVHSVTNRDSSFSDHADLPGTLTRRLMFFMRDLYDAYDGTVRNLYGDQIIQFSYDIEDSSSDSSFQEYTMGGESVGALSACAISEAAYSALSQPVSLLETSPLLNLKKVLECGSKRRGGEQTVSLFLSEKLGKQRHGFEYAALEVKNYLEGLMFSNIVSTVMIIYVPQSCSQEKYSPWVCHFHLDKEIVMRRKLKVHSITDSLYQRYDSHRKGSKVSFPNLKISSKKFSADSMGKEDEDTSVDREKGGDDCITVSIVENSKNPIQLDSVRDLMVPFLLGTSIKGFLEIKKVDIQWNNLSKGTHSYNGSSGELYLRVTMSSDGSRGRFWGVLISHCLKIMHLIDWTRSRPDNINHFSSAYGIDAGWQCFLNNLASATSDTGKSILPKHLRLVANTLSASGEFVGLNAKGMARQRKHASVSSPFVQACFSNPGSSFIKAAKTGVMDNLQGCLDALAWGNCMSMGTSGQFDIIYSEKGHEVTKSADVYNLLAASIDKLNDKIITPHSHNYSSDKFGSEFRPKNGGYSLKESKQWKNILRNFVTVNDIQKLTSASRCILNKYSIDELLSERDKLTMLKVLRFHPCKNEKFGTGARDIKVGWHPKHKDSRCFHIVRTDGTVEDFSYRKCILGALEIVDPEKSKIQKKKWLGHGDI* 1457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0625 1456 CDD RNAP_IV_RPD1_N 24 848 IPR040403 -
Apr7g0625 1456 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1278 - -
Apr7g0625 1456 Gene3D RNA polymerase Rpb1, domain 3 479 625 IPR042102 -
Apr7g0625 1456 Gene3D RNA polymerase ii 345 397 - -
Apr7g0625 1456 Gene3D - 1342 1433 - -
Apr7g0625 1456 Gene3D - 627 801 IPR038120 -
Apr7g0625 1456 Pfam RNA polymerase Rpb1, domain 3 475 623 IPR007066 GO:0003677|GO:0003899|GO:0006351
Apr7g0625 1456 PANTHER DNA-DIRECTED RNA POLYMERASE IV SUBUNIT 1 2 1349 - -
Apr7g0625 1456 Pfam RNA polymerase Rpb1, domain 2 312 469 IPR000722 GO:0003677|GO:0003899|GO:0006351
Apr7g0625 1456 Pfam Protein of unknown function (DUF3223) 1360 1431 - -
Apr7g0625 1456 PANTHER DNA-DIRECTED RNA POLYMERASE 2 1349 IPR045867 GO:0003899|GO:0006351
Apr7g0625 1456 Pfam RNA polymerase Rpb1, domain 4 689 751 IPR007083 GO:0003677|GO:0003899|GO:0006351
Apr7g0625 1456 Gene3D - 307 478 - -
Apr7g0625 1456 Gene3D RNA polymerase II, clamp domain 6 122 IPR044893 -
Apr7g0625 1456 SMART rpolaneu7 217 499 IPR006592 GO:0003677|GO:0003899|GO:0006351
Apr7g0625 1456 Pfam RNA polymerase Rpb1, domain 1 16 232 IPR007080 GO:0003677|GO:0003899|GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0625 Apr-Chr7 12898040 12910563 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0625 K16250 - gmx:100810483 2330.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0625 7 12898040 12910563 Apr7g0625 7 12898040 12910563 ECH