Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0539 ATGTCTTCATCCAAAGACGCGGACCCAACCCTTGGTTACCTTACTCGGAAGGACACGGAGGTGAAGCTTCCGCGGCCAACCAGGGTAAAGAACAAAACCCCCGCTCCAATTCAAATAACCGCCGAGCAGATTCTTCGCGAGGCTCGGGAGCGTCAAGAGGCCGAGATCCGTCCTCCGAAGCAGAAGATCACCGACGCGACAGAACTCGGCGAGTATCGGTTGCGGAAGAGGAAGGAGTTCGAGGACCTAATTCGGCGCGTGCGATGGAACATTGGCGTGTGGATCAAGTACTATGCGGAGGTGGAGATGAAGAACAAGTTCATAAACCACGCTAGGAACGTGTGGGACCGTGCTGTTACACTTTTGCCTAGGGTTGATCAGTTATGGTACAAGTACATTCACATGGAGGAGATGCTCGGCAATGTTGCCGGCGCGAGACAGGTTTTCGAAAGGTGGATGAAATGGATGCCTGATCAGCAGGGATGGCTCTCTTACATTAAGTTTGAGTTAAGATACAACGAGGTTGAGCGAGCCAGAGAGATATTTGAGCGATTTGTTCAGTGCCACCCGAAGGTTGGGGCATGGATTCGATATGCTAAATTTGAGATGAAGAATGGAGAAGTTTCTAGGTCCAGGAATGTTTATGAGAGAGCGGTGGATAAGCTCTCCGACGACGAAGAAGCGGAGCAGCTATTTGTTGCTTTTGCTGAGTTTGAGGAAAGGTGTAAGGAGACAGAGCGTGCAAGAGCTATATATAAGTTTGCCCTTGATCATATTCCCAAGGGAAGGGCAGAGGATTTGTATCGCAAGTTTGTGGCCTTTGAAAAGCAGTATGGTGATAGGGAAGGGATTGAGGATGCTATTGTTGGGAAGAGACGGTTTCAGTATGAGGATGAAGTGAGGAAAAATCCATTGAATTATGATTCTTGGTTTGACTACATAAGGTTGGAAGAAAGTGTGGGCAATAAAGAAAGAGTCAGGGAGGTTTATGAGAGGGCTATAGCCAATGTGCCTCCAGCAGAGGAAAAGCGGTATTGGCAGCGCTATATCTATTTGTGGATTAATTATGCCCTCTACGAAGAGCTTGATGCTGGAGACATGGAGCGAACAAGGGATGTATACAGGGAGTGTCTCAACCAGATACCTCACCATAAGTTCTCGTTTGCAAAGATATGGCTTCTAGCAGCTCAGTTTGAAGTACGTCAGCTGAATCTCAAGGGTGCTCGACAAATATTAGGAAATGCCATTGGAAAGGCCCCTAAAGACAAGATTTTTAAGAAGTATATAGAGATAGAGTTGCAGCTTGGTAATATAGATCGGTGCAGAAAACTTTATGAAAAATATCTGGAGTGGTCTCCTGAGAATTGCTATGCTTGGAGCAAGTATGCAGAATTGGAGAGATCTTTATCTGAGACTGATCGGGCTAGAGCAATTTTCGAACTTGCAATTGCTCAACCAGCACTAGACATGCCTGAGCTGTTGTGGAAGGCATACATTGACTTTGAGACTGCCGAGGGTGAGTTCGAAAGAGCTAGAGCCCTTTATGAAAGACTTCTTGATCGAACAAAGCATTTGAAAGTTTGGATAAGTTATGCTGAATTTGAGGCTACGGCTGTGGACAAGGACAATGTGGACTTAACAGAACATGAACAAAAGAAGCAATGCATTCAGCGTGCTAGAAGGGTGTTTGAGGAAGCTCTTAACTACTACAGATCATCTGCTCCTGATTTGAAAGAAGAAAGGGCAATGCTATTGGAGAAATGGCTCAACATGGAGGCTTTGTTTGGGGAGCTGGGTGACGTTAGCTTAGTCCAATCTAAGCTGCCCAAGAAGCTCAAGAGAAAGCGGGTTATCACTGAAGATGGTGCTTCGAGAACTGAAGAAATCATCGACTATTTGTTCCCTGAGGAAACTGAGACAGCCTTTGGCAAGATCTTGAATGCTGCTCAAAAATGGAAGATGCAAAAATTGTCTTCTGGTGATATTTAG 1989 0.4575 MSSSKDADPTLGYLTRKDTEVKLPRPTRVKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDATELGEYRLRKRKEFEDLIRRVRWNIGVWIKYYAEVEMKNKFINHARNVWDRAVTLLPRVDQLWYKYIHMEEMLGNVAGARQVFERWMKWMPDQQGWLSYIKFELRYNEVERAREIFERFVQCHPKVGAWIRYAKFEMKNGEVSRSRNVYERAVDKLSDDEEAEQLFVAFAEFEERCKETERARAIYKFALDHIPKGRAEDLYRKFVAFEKQYGDREGIEDAIVGKRRFQYEDEVRKNPLNYDSWFDYIRLEESVGNKERVREVYERAIANVPPAEEKRYWQRYIYLWINYALYEELDAGDMERTRDVYRECLNQIPHHKFSFAKIWLLAAQFEVRQLNLKGARQILGNAIGKAPKDKIFKKYIEIELQLGNIDRCRKLYEKYLEWSPENCYAWSKYAELERSLSETDRARAIFELAIAQPALDMPELLWKAYIDFETAEGEFERARALYERLLDRTKHLKVWISYAEFEATAVDKDNVDLTEHEQKKQCIQRARRVFEEALNYYRSSAPDLKEERAMLLEKWLNMEALFGELGDVSLVQSKLPKKLKRKRVITEDGASRTEEIIDYLFPEETETAFGKILNAAQKWKMQKLSSGDI* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0539 662 MobiDBLite consensus disorder prediction 1 35 - -
Apr7g0539 662 SUPERFAMILY TPR-like 173 267 IPR011990 GO:0005515
Apr7g0539 662 SUPERFAMILY TPR-like 81 174 IPR011990 GO:0005515
Apr7g0539 662 SUPERFAMILY TPR-like 493 593 IPR011990 GO:0005515
Apr7g0539 662 SMART hat_new_1 470 504 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 403 434 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 243 277 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 173 204 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 206 241 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 71 103 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 321 355 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 140 171 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 106 138 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 506 537 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 365 401 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 287 319 IPR003107 GO:0006396
Apr7g0539 662 SMART hat_new_1 436 468 IPR003107 GO:0006396
Apr7g0539 662 MobiDBLite consensus disorder prediction 11 27 - -
Apr7g0539 662 Pfam HAT (Half-A-TPR) repeat 174 202 IPR003107 GO:0006396
Apr7g0539 662 Coils Coil 501 521 - -
Apr7g0539 662 PANTHER - 98 660 - -
Apr7g0539 662 PANTHER - 22 97 - -
Apr7g0539 662 Gene3D Tetratricopeptide repeat domain 290 502 IPR011990 GO:0005515
Apr7g0539 662 Gene3D Tetratricopeptide repeat domain 60 289 IPR011990 GO:0005515
Apr7g0539 662 Gene3D Tetratricopeptide repeat domain 505 636 IPR011990 GO:0005515
Apr7g0539 662 SUPERFAMILY TPR-like 261 490 IPR011990 GO:0005515
Apr7g0539 662 PANTHER PRE-MRNA SPLICING FACTOR 22 97 IPR045075 GO:0000398
Apr7g0539 662 PANTHER PRE-MRNA SPLICING FACTOR 98 660 IPR045075 GO:0000398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0539 K12869 - gmx:100811745 1225.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0539 7 11831061 11835766 Apr7g0539 7 11831061 11835766 ECH