Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0419 ATGCTCTCTAGGGTCCGATTCCTCAACCTCTTCGTTCACCGTGTTTCCCCAACAATCACCACCGTCAATGGCTCGTATCGCTCCCTTTACAGCAACCCTTTCTGCACCATTGTTAAGTCGCAAGAGTCACCGGAACTCCCACCTTGGGTCAATTTCTCCGACAAGCCACCCCCTCGAAAGGCAAACTCAGATGATGACTTCGTTATTCCTTCACTTGCCTATTGGGTCGACACCCACATGCTCAGTGCCAAGCCCATAGTTGTGAAACAAACTTTCAAGGAAAACAAGGTCGAAGATGTCGAATCAATAACCGTGGTTCTAAAGAAACGGTTCTCTTCTCCTGAGTTAGTTGCTCCAGCACTTGATGGACTCGGTTTTAAGGTTTCAAATAGTTTGGTGAAACAGGTTCTGAAGAGATTCAGCAACGACTGGGTCCCAGCTTTCGGATTTTTCAAATGGGCCAAAGCTCAAACAGGTTACCAGCATTCTCCTGAACTGTACAACTTGATGGTTGACATCTTGGGGAAGTCCAATAATTTTGATCTTATGTGGGAATTGGTGGAGGAAATGGCACAGCTTGAAGGCTATGTGACATTGTACACTATGGCTAACGTAATGAGGAGGCTTGCTAAGGCTTGCAAGCATCAAGAAGCCATTGAAGCATTTCACAGAATGGGGGAGTTTGGTGTCAAGAAGGACACTGAAGCGTTGAATGTGCTGATGGATGCATTGGTGAAAGGAAATAGTGTTGAGCGTGCCCACGGTGTTTTTTTGGAATTCAAGAGTGGGGTTCCTTTGAATTCTCATTCTTTCAATGTTTTGATGCATGGGTGGTGCAAAGCTAGAAACTTTGACAAGGCCCAGAAAGCAATGGAGGAGATGAAGGAACATGGGTTTGTCCCTGATGTTTTCTCATATACGTGTTTCATTGAAGCATATTGCCGTGAGAAGGATTTCCGCAAGGTGGATCAAGTTTTAGAGGAGATGAGGGGAAATGGGTGCACCCCTAATGCTGTGACTTATACCATTGTGATGCTTGCTTTGGGGAAGGCAGGCCAACTGACTAAAGCTTTGCAGGTTTATGATAAAATGAAGAGTGATGGCTGTGTTCCCGACACTGCATTTTATAACTCATTGATATTCATTCTTGGCAGTGCCGGCAGGTTAAGGGATGCTTGCGAAGTGTTTGAGGATATGCCCAAGCAAGGGGTGGTGCGTGATGTGTTGACATACTCTACTATGATTAATATTGCTTGTGAATACTCACGAGAAGAGACTGCTTTTAGGTTGCTTAAGGAAATGGAAGATGGATCATGCAAGCCTAATGTTGAGACGTATCATCCGTTGCTCAAGATGTGCTGCAAGAAGAAGAGAATGAAGTTGATCAAGTTTTTGTTGGATCACATGCTCAAAAATGATGTCAGCCTTGATTTGGGAACTTATACTCTCTTGGTACATCGTACGTGTAAAAGTGGAAAACTTGAGCATGCTTGCTTATTCTTTGAGGAAATGGTCTGGCGGGGATTTACTCCCAAGCCCAACACCCTCCCGCTATTGGTTCGAATGCTCCAGTCCAAGAGGATGTTTAAGGAGCAAGAACATGTTCAGAAATTAATGGAACGCGTCTCCGAGTCACCAAATATTTAG 1647 0.4463 MLSRVRFLNLFVHRVSPTITTVNGSYRSLYSNPFCTIVKSQESPELPPWVNFSDKPPPRKANSDDDFVIPSLAYWVDTHMLSAKPIVVKQTFKENKVEDVESITVVLKKRFSSPELVAPALDGLGFKVSNSLVKQVLKRFSNDWVPAFGFFKWAKAQTGYQHSPELYNLMVDILGKSNNFDLMWELVEEMAQLEGYVTLYTMANVMRRLAKACKHQEAIEAFHRMGEFGVKKDTEALNVLMDALVKGNSVERAHGVFLEFKSGVPLNSHSFNVLMHGWCKARNFDKAQKAMEEMKEHGFVPDVFSYTCFIEAYCREKDFRKVDQVLEEMRGNGCTPNAVTYTIVMLALGKAGQLTKALQVYDKMKSDGCVPDTAFYNSLIFILGSAGRLRDACEVFEDMPKQGVVRDVLTYSTMINIACEYSREETAFRLLKEMEDGSCKPNVETYHPLLKMCCKKKRMKLIKFLLDHMLKNDVSLDLGTYTLLVHRTCKSGKLEHACLFFEEMVWRGFTPKPNTLPLLVRMLQSKRMFKEQEHVQKLMERVSESPNI* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0419 548 Pfam PPR repeat 167 191 IPR002885 -
Apr7g0419 548 Pfam PPR repeat 205 230 IPR002885 -
Apr7g0419 548 Pfam PPR repeat 270 299 IPR002885 -
Apr7g0419 548 Pfam PPR repeat 237 261 IPR002885 -
Apr7g0419 548 Gene3D Tetratricopeptide repeat domain 351 547 IPR011990 GO:0005515
Apr7g0419 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 36 545 - -
Apr7g0419 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 267 301 IPR002885 -
Apr7g0419 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 371 IPR002885 -
Apr7g0419 548 Pfam PPR repeat family 301 348 IPR002885 -
Apr7g0419 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 442 476 IPR002885 -
Apr7g0419 548 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN MITOCHONDRIAL 36 545 - -
Apr7g0419 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 372 406 IPR002885 -
Apr7g0419 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 407 441 IPR002885 -
Apr7g0419 548 TIGRFAM PPR: pentatricopeptide repeat domain 166 192 IPR002885 -
Apr7g0419 548 TIGRFAM PPR: pentatricopeptide repeat domain 480 511 IPR002885 -
Apr7g0419 548 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Apr7g0419 548 TIGRFAM PPR: pentatricopeptide repeat domain 304 338 IPR002885 -
Apr7g0419 548 TIGRFAM PPR: pentatricopeptide repeat domain 270 303 IPR002885 -
Apr7g0419 548 TIGRFAM PPR: pentatricopeptide repeat domain 376 408 IPR002885 -
Apr7g0419 548 TIGRFAM PPR: pentatricopeptide repeat domain 339 373 IPR002885 -
Apr7g0419 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Apr7g0419 548 Gene3D Tetratricopeptide repeat domain 115 245 IPR011990 GO:0005515
Apr7g0419 548 Gene3D Tetratricopeptide repeat domain 246 350 IPR011990 GO:0005515
Apr7g0419 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 477 511 IPR002885 -
Apr7g0419 548 Pfam Pentacotripeptide-repeat region of PRORP 350 497 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0419 Apr-Chr7 10284644 10286773 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr7g0419 233 548 Glycosyltransferase AT1G05670 25.472 6.95e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0419 - - gmx:100808343 754.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0419 7 10284644 10286773 Apr7g0419 7 10284644 10286773 ECH