Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0005 ATGAGAATCGGATCGGTGTTCGACGGCGGCGAGCTGAGAAGGGAATTCGAAAAAAGTGGAATTGACCCAAAATTCATTCGAATCATATGGAAGCGTGTGGTTCTCAGTCTGAACGAAAAGGAGGAATGGGATTGGGAAAAACAAGTTCCTTCGTTGCCTTCGTCAGCGTACTCTCTGCTTCGTTCCAACCTGGGAAGCCCTCTCTCTTCCTCTCTGCACTCTGTTTTCCACTCTGCCGATAACCTAACCTCAAAGCTCCTCATCAAGCTTCGCAATGGAGCTTTTGTGGAGGCTGTGATAATGAGGTATGATACTCGTTTGGGCAAATATGCTGGTAAACCCCGTCCTGGCGGTCTTAGAGCTACTTTGTGCATTTCATCTCAGGTAGGATGCAAAATGGGTTGCAAATTCTGTGCAACTGGAAGCATGGGATTCAAAAATAACTTATCATCGGGAGAAATTGTGGAGCAGTTGGTTCATGCTTCCAGTTTCTCACAAATCCGCAATGTTGTATTCATGGGAATGGGCGAGCCTCTGAACAACTATTCTGCTGTGGTAGATGCTGTTCAAATCATGACTGGATCACCATTTCAATTGTCATTGAAGAGGATTACCATCTCAACTGTTGGCATTATCCATGCTATCAACAAGCTTCATAATGACCTGCCAGGTTTGAACTTGGCAGTCTCACTGCATGCACCAGCCCAAGACATCCGTTGCCAGATAATGCCTGCTGCTCGTGCTTTCCCTTTGGAAAAACTTATGGATTCACTGCAAGAATATCAAAGGAAAAGTCTGCAGAAAATATTAATTGAATACATAATGCTTGATGGGGTGAATGATGAAGAGCAGCATGCCCACCAATTGGGGAAACTGTTGGAGACGTTTCAAGTGGTAGTGAACTTAATACCATTCAACCCCATTGGTAACTTGAGCCAATTCAAACCAACCACGGAGCAGAAAGTCTCAAAATTTCAGAAAATTCTTAGGGGTACCTATAATATTCGAACTACAGTTCGGAAGCAGATGGGACAGGACATAAGTGGTGCTTGTGGACAATTGGTGGTTAACATACCTGACAGGTCCCTTGCCAATGCATATCCTCTAACGGACATAGAAGATCTTGTTATTTGA 1134 0.4418 MRIGSVFDGGELRREFEKSGIDPKFIRIIWKRVVLSLNEKEEWDWEKQVPSLPSSAYSLLRSNLGSPLSSSLHSVFHSADNLTSKLLIKLRNGAFVEAVIMRYDTRLGKYAGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASSFSQIRNVVFMGMGEPLNNYSAVVDAVQIMTGSPFQLSLKRITISTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMDSLQEYQRKSLQKILIEYIMLDGVNDEEQHAHQLGKLLETFQVVVNLIPFNPIGNLSQFKPTTEQKVSKFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNIPDRSLANAYPLTDIEDLVI* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0005 377 SFLD Radical SAM 74 360 IPR007197 GO:0003824|GO:0051536
Apr7g0005 377 PIRSF Cfr 10 371 IPR004383 GO:0006364|GO:0008173
Apr7g0005 377 PANTHER 23S RRNA METHYLTRANSFERASE 4 367 IPR040072 -
Apr7g0005 377 CDD Radical_SAM 130 331 - -
Apr7g0005 377 PANTHER RADICAL SAM SUPERFAMILY PROTEIN 4 367 - -
Apr7g0005 377 Gene3D Aldolase class I 71 361 IPR013785 -
Apr7g0005 377 SUPERFAMILY Radical SAM enzymes 122 334 - -
Apr7g0005 377 Pfam 4Fe-4S single cluster domain 130 216 - -
Apr7g0005 377 Pfam Radical SAM superfamily 126 284 IPR007197 GO:0003824|GO:0051536
Apr7g0005 377 SFLD adenosine C2 methyltransferase (RlmN-like) 74 360 IPR004383 GO:0006364|GO:0008173
Apr7g0005 377 ProSiteProfiles Radical SAM core domain profile. 117 346 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0005 Apr-Chr7 296537 299645 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0005 - - ccaj:109814608 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0005 7 296537 299645 Apr7g0005 7 296537 299645 ECH