Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr7g0001 ATGGAGGGAACAGAAACCAAAACGAATGGTGATGGTGACGGTGAGGGTTGTCGTCCATGGCAGTCCTACCACACTGTTTACACAAGCTCCAAAGCAGGAATGGAAGGGGTTGACAAGGAGAAAGTACAAAGGGTAGTGTATGAAATGAGCAAAGGATCCAATTTTTTTCAAAACGAGGAACGGAAGGACGCTTTTATTAAGCAGAAAATTGATAACTTTCGAATTCAGTGTGCAAAGCTTACACAAGAAGACTTGTCCCATTATCAGAAGGTGTCTGATAGAAGAATTCTTGAACTAGAAGCTTCACGTGACCTTTCAAGAATTTGGTTACATGTAGATATGGATGCTTTCTATGCAGCAGTTGAGACTTTAAGTAATCCTACATTAAAAGGCAAGCCAATGGCTGTTGGTAGCATGTCTATGATATCCACTGCCAATTATGAGGCCCGGAAATTTGGGGTTCGTTCTGGCATGCCTGGGTTCATTGCACGCAAGCTGTGTCCAGAATTAATATTTGTCCCAATAGATTTCAATAAGTATAATTATTACAGTGATTTGACCAGAAATGTTTTTCGGAGGTATGATCCCAATTTCATGGCTGGTAGCCTGGATGAAGCATACCTTGATATAACTGAAGTTTGCAAAGAAAGGAATGTCAACAGTGAAGAAATTGCCCAAGAACTCAGAGTTAGTGTTTATGGAGAGACTGGTCTCACATGTAGTGCTGGAGTGGCTCCAAATCGCTTACTTGCTAAGGTTTGCTCAGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATAACCGCATGGCTGTCATGACCTTCATATCCTCCCTTCCTATAAGAAAGATTGGGGGCATTGGTAAGGTCACTGAAGATATTTTGAAGGGAGTTTTAGGAATTAACACATGTGAACAGATGCTGGAGAAGAGTATCTACCTTTTTGCTCTTTTCTCTCAATCAACAGCTGAATTTTTTTGCTCTGTAGGTTTAGGTCTTGGGAAGACAGATTCTCCCCAAGTAAGATTTCGGAAAAGTATAAGCAATGAAAGAACATTTCCTGCCACTGCAGATGAAGTGTTGTTGCATAAAAAATTGGTGGAGCTTGCTGAAATGCTATCAACAGACATGCAGAAAGAGGGTCTGTGTGGCCGAACATTGACTCTTAAACTGAAAACTGCTTCTTTCAAGGTTCGGACTAGAGCTGTGACTTTACAAAGGTACATAAGCTCGAGTGAGGATATTTTGAAGCATGCTTCAAAGTTGCTAAAGGCTGAACTTCCTATTTCAGTAAGATTGATAGGCCTTAGAGTATCACAGTTTAATGTTGACAAGGGTAGTGCCCCATCTGATCCTACACAGAAGACAATTACCAACTTCATTACTTCAGGAGATCCCAATAGAAATTGTAGTTCTTTCCCAGTTGCTACAGATCATGACTTTGTCAGTGATACGGAAACTGATCTTGATTCATCAGATGTTGATTACCATAGCTGCACCATCTGGAAAAATGATGGTGCAGAGGAGGTGCAAACATCTGGCAATGATGCCACTATTTCTAATTACAGTGGATCTACAGAAGTGCTGGGATCAACTTCTTTCCAGGGGCAGTTTGAAGGTATAAATGTGCAGAATGGGTCTAATCTCCTGGAGGATGAGGAACTTAATTCTTCTTGTCAGGAAAAGACAATGTTGTGGTTGAATGACTACAAGTGTTCAGTTTGTGGAGTTGAACTGCCTCCAAGTTTCATTGAGGAAAGATTAGAGCACTCTGATTTTCATCTTGCTGAAAAGATTCAAAGAGAAGAATCTAGGATTCACCAAACTTCGTTTCCGAGTCAATATCGGGATCAGAAGGATCGAATCACTAGACAAAGCAAATCCAAGAAGCAGAAATTGTCGCAGAAAGAAGGCAAGTATACACCTATTGATTATTTTTTTGTTAAAAAGTAA 1956 0.4034 MEGTETKTNGDGDGEGCRPWQSYHTVYTSSKAGMEGVDKEKVQRVVYEMSKGSNFFQNEERKDAFIKQKIDNFRIQCAKLTQEDLSHYQKVSDRRILELEASRDLSRIWLHVDMDAFYAAVETLSNPTLKGKPMAVGSMSMISTANYEARKFGVRSGMPGFIARKLCPELIFVPIDFNKYNYYSDLTRNVFRRYDPNFMAGSLDEAYLDITEVCKERNVNSEEIAQELRVSVYGETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNNRMAVMTFISSLPIRKIGGIGKVTEDILKGVLGINTCEQMLEKSIYLFALFSQSTAEFFCSVGLGLGKTDSPQVRFRKSISNERTFPATADEVLLHKKLVELAEMLSTDMQKEGLCGRTLTLKLKTASFKVRTRAVTLQRYISSSEDILKHASKLLKAELPISVRLIGLRVSQFNVDKGSAPSDPTQKTITNFITSGDPNRNCSSFPVATDHDFVSDTETDLDSSDVDYHSCTIWKNDGAEEVQTSGNDATISNYSGSTEVLGSTSFQGQFEGINVQNGSNLLEDEELNSSCQEKTMLWLNDYKCSVCGVELPPSFIEERLEHSDFHLAEKIQREESRIHQTSFPSQYRDQKDRITRQSKSKKQKLSQKEGKYTPIDYFFVKK* 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr7g0001 651 PANTHER DNA POLYMERASE KAPPA 11 631 - -
Apr7g0001 651 MobiDBLite consensus disorder prediction 605 637 - -
Apr7g0001 651 Pfam impB/mucB/samB family C-terminal domain 345 448 IPR017961 GO:0003684|GO:0006281
Apr7g0001 651 Gene3D - 114 264 IPR043128 -
Apr7g0001 651 SUPERFAMILY DNA/RNA polymerases 82 337 IPR043502 -
Apr7g0001 651 Pfam IMS family HHH motif 272 302 IPR024728 -
Apr7g0001 651 Pfam Ubiquitin-Binding Zinc Finger 570 603 IPR041298 -
Apr7g0001 651 Gene3D - 343 448 IPR036775 GO:0003684|GO:0006281
Apr7g0001 651 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 343 440 IPR036775 GO:0003684|GO:0006281
Apr7g0001 651 Gene3D - 265 338 - -
Apr7g0001 651 ProSiteProfiles UmuC domain profile. 109 289 IPR001126 GO:0006281
Apr7g0001 651 CDD PolY_Pol_IV_kappa 110 442 IPR022880 GO:0003887
Apr7g0001 651 Pfam impB/mucB/samB family 112 256 IPR001126 GO:0006281
Apr7g0001 651 Hamap DNA polymerase IV [dinB]. 106 458 IPR022880 GO:0003887
Apr7g0001 651 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 11 631 - -
Apr7g0001 651 PIRSF DNA_pol_eta 101 223 - -
Apr7g0001 651 PIRSF DNA_pol_eta 219 467 - -
Apr7g0001 651 PIRSF DNA_pol_eta 463 651 - -
Apr7g0001 651 Gene3D - 126 174 - -
Apr7g0001 651 Gene3D - 27 113 - -
Apr7g0001 651 ProSiteProfiles Zinc finger UBZ3-type profile. 566 603 IPR041298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr7g0001 Apr-Chr7 18525 23402 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr7g0001 K03511 - gmx:100816973 1076.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr7g0001 7 18525 23402 Apr7g0001 7 18525 23402 ECH