Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1104 ATGAATCGCCAGAAATCCTTACTTTCATTTTTCCACAAAACCACGCCGGAAAACCGCAGTTCCGGCCTAGGGCGAGCTCCCGGTTCATCGGTTCAGCAAGCCGACCGTATTGACACTGCCGCCTTCAATCAGCAGCCGACGGCCGATGACGTCAGAGGAACCGACACGCCGCCGGAGAAGGTGCCACGTCAGGTTTTACCGGCGAGTTTCGCGCCAAGTGAGAACAAATTTGGTCCGTCCCTATTTGAGAGCATCATGCACAAATTCGTCAAGGTCGATGATGACGAAAGAGTTATTCAGAGGAGCCACTTGTCAAATGTTAGTTTGCCTAAATCTTCATCATCGGGACTATGTACTGAAAGTAACCGTAAAGAAGCAGCTTCTCAACCTTTGGTAAAAGCAAGGGATAATGCTGCAAAATTCAAGGAAAAGACGATTAATCAGGAAAACATCATCGAGATTGAAACTGATGATGATATTACTGGACCAGTAACCCCAGGGATGCAGCCTCTTGCTTCTCATGCAAAGCGAAGTCGCGAGGATGGATCCAAGTTTTGTTCCTTGCTGGATTCTGGCAAACGAGTCAGATTTCTTGAGGAATCAAAAGCTGTGAACATGACTGAGAAGGAAGCAGAACTGGCTAGCAAGTTTGAATGGCTCGATAATTCTCGAATCAGGGATGCTAAAGGAAGAAGACCCAATGATCCTTTATATGACAGGACGACACTTTATATACCTCCAGAAGTTTTGAAAAAAATGTCAGCATCACAGAAACAGTATTGGAGTGTCAAATGTAAATATATGGATGTTGTGCTATTTTTTAAAGTGGGAAAGTTTTACGAGCTTTATGAAATGGATGCTGAGATTGGCCATAAGGAGCTTGATTGGAAAATAACATTAAGTGGCGTGGGAAAATGTCGGCAGGTTGGTATATCTGAAAGTGGGATTGATAATGCTGTTCAAAGCCTGGTTGCTCGTGGATATAAGGTTGGACGAGTGGAGCAATTGGAGACATCTGAACAAGCAAAAGCTAGAGGAGCCAACTCTAGAAAATTAGTTCAGGTAGTCACTCCATCAACCACTGTGGATGGTAATATTGGTCCTGATGCCAATCATCTTCTTGCAATTAAAGAGGGGAACAATGGTTTGGATAATGGTTCAGTTGTGTACGGATTTGCTTTTGTTGATTGTGCTCGGCTTAGATTTTGGGTTGGTTCTATAGATGATGATGCATCCTGTTCTGCTTTGGGGGCTTTATTGATGCAAGTGTCACCCAGGGAAGTTATGTATGAAAGCAGAGGGTTGTCCAAAGAAGCTCAGAAAGCTCTTAGAAAATTCTCGTTGAATGGTTCAACCACACTACAGTTCACTCCAGTGCAGTCGATCACTGATTTGGTTAACACTGAAATTAGGGATTTAATTTGCTCAAAGGGATACTTCAAGGGATCCTCTCATGCACTGGATCATGTACTGAGCAATGTGGTTCATCGTGAAAGCACCTTGTCTGCTCTTGGTGGACTGATTGGTCATCTTGATAGATTGATGTTAGTTGATATCCTACAGAATGGGGATATATATCCATATCAAGTTTATAGTGGTTGCCTCAAAATGGACGGTCCAACATTGATAAATCTAGAAATCTTTGGCAATAATGAGGATGGTGGCAAATCAGGCTCATTGTACAATTATCTTGATAACTGTGTAACTTCATCTGGAAAGCGGCTTCTTAGGAATTGGATCTGCTGTCCATTAAAAGATGCTGAAGGAATTAATAACAGGCTTGATGTAGTGGATGATCTAGTGTCTTACCCTGAGATTGTATCACATATTGCTCAACATCTTCGGAAGCTTCCAGACTTGGAACACTTGCTTGCCCGACTTAAATCCAGCCTTCAACTATCAGGCCCTCTCTTACTGCCATTGTTGCGAAAGAAAACATTGAAGCAGAGAGTCAAAGTTTTTGGGTCTCTTGTGAAAGGCTTTCGGACTGCTTTGGGATTGTTGCTTCTTCTGCAGAAAGAGCAACCTTTAATATCATCTCTGACCAAAGTTTTTAAGCTTCCAATTCTGACTGGTAGTAATGGGCTCGATCAATTTCTTACTCAATTTGAAGCAGCTGTAGTTAGTGACTTCCCAAATTACCAGAATCATGATGTAACAGATTCGGATGCTGAAACACTCACAATACTTGCTGAATTATTTTTGGAGAAAGCTGCTCAATGGTTTGAAGTTGTTCATGCTATCAATTGCATTGATGTACTGAGATCTTTCGCTGTTACTTCTAGCTTTTCATGTGGAACTATGTCTAGGCCAGTCATAGTACCAGCATCAAAAGGAACAAGACAAGACAGTGGAGGACCTGTGCTCAAGGTGAAGGGACTATGGCACCCATTTGCCTTTGCAGAGAGTGGATGTTTGCCTGTCCCCAATGACATAATCCTTGGTGAGAATGAAGATGGGTCACATCCTCGCACACTGCTGCTGACTGGACCAAACATGGGTGGGAAGTCAACACTTCTGCGAGCTACCTGTCTAGCTGTTATTATGGCCCAGCTAGGCTGTTATGTGCCAAGTGAAAATTGTGTTCTCTCAGTTGTGGATATCATCTTCACACGGCTTGGAGCCAAAGATAGAATCATGACAGGCGAGAGTACCTTCTTTATTGAGTGTACAGAAACTGCATCAGTGCTTCATAATGCAACTCAAGATTCTCTTGTTATCCTTGATGAATTGGGTCGGGGAACAAGCACTTTTGATGGCTATGCCATTGCATATGCAGTATTCAGGCATCTGATTGAAAAGGTTAACTGTCGCTTGCTATTTGCAACACATTACCATCCGCTAACAAAAGAATTTGCCTCACATCCACATGTTACAATGCAGCACATGGCTTGTGCTTTCAAATCAAAATCTGATACCTATTCCAAACGTGATCAGGAACTAGTCTTCCTATATCGGCTTGCCTCAGGAGCATGTCCGGAGAGTTACGGGTTGCAGGTAGCCCTCATGGCTGGAATCCCAGAAAAGACGGTAAACATCGCTTCAAAGGCTAGTCAACAGATGAAAAAATCAATTGGACAAAGTTTTAGGTCATGCGAACAGAGATCAGAGTTCTCAACTCTTCATGAAGAATGGTTGAAGACCTTGGTGTCTATCTCACGAATAGAGGATTGTAAATCTTATGACGAAGATGTTTTAGATACATTAGTCTGTCTTTGGTATGAGCTTCAAATTTCATTTAGATCAGGCAAGTAG 3255 0.4264 MNRQKSLLSFFHKTTPENRSSGLGRAPGSSVQQADRIDTAAFNQQPTADDVRGTDTPPEKVPRQVLPASFAPSENKFGPSLFESIMHKFVKVDDDERVIQRSHLSNVSLPKSSSSGLCTESNRKEAASQPLVKARDNAAKFKEKTINQENIIEIETDDDITGPVTPGMQPLASHAKRSREDGSKFCSLLDSGKRVRFLEESKAVNMTEKEAELASKFEWLDNSRIRDAKGRRPNDPLYDRTTLYIPPEVLKKMSASQKQYWSVKCKYMDVVLFFKVGKFYELYEMDAEIGHKELDWKITLSGVGKCRQVGISESGIDNAVQSLVARGYKVGRVEQLETSEQAKARGANSRKLVQVVTPSTTVDGNIGPDANHLLAIKEGNNGLDNGSVVYGFAFVDCARLRFWVGSIDDDASCSALGALLMQVSPREVMYESRGLSKEAQKALRKFSLNGSTTLQFTPVQSITDLVNTEIRDLICSKGYFKGSSHALDHVLSNVVHRESTLSALGGLIGHLDRLMLVDILQNGDIYPYQVYSGCLKMDGPTLINLEIFGNNEDGGKSGSLYNYLDNCVTSSGKRLLRNWICCPLKDAEGINNRLDVVDDLVSYPEIVSHIAQHLRKLPDLEHLLARLKSSLQLSGPLLLPLLRKKTLKQRVKVFGSLVKGFRTALGLLLLLQKEQPLISSLTKVFKLPILTGSNGLDQFLTQFEAAVVSDFPNYQNHDVTDSDAETLTILAELFLEKAAQWFEVVHAINCIDVLRSFAVTSSFSCGTMSRPVIVPASKGTRQDSGGPVLKVKGLWHPFAFAESGCLPVPNDIILGENEDGSHPRTLLLTGPNMGGKSTLLRATCLAVIMAQLGCYVPSENCVLSVVDIIFTRLGAKDRIMTGESTFFIECTETASVLHNATQDSLVILDELGRGTSTFDGYAIAYAVFRHLIEKVNCRLLFATHYHPLTKEFASHPHVTMQHMACAFKSKSDTYSKRDQELVFLYRLASGACPESYGLQVALMAGIPEKTVNIASKASQQMKKSIGQSFRSCEQRSEFSTLHEEWLKTLVSISRIEDCKSYDEDVLDTLVCLWYELQISFRSGK* 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1104 1084 MobiDBLite consensus disorder prediction 107 130 - -
Apr6g1104 1084 SUPERFAMILY DNA repair protein MutS, domain II 369 550 IPR036678 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 MobiDBLite consensus disorder prediction 41 60 - -
Apr6g1104 1084 SUPERFAMILY DNA repair protein MutS, domain III 538 762 IPR036187 -
Apr6g1104 1084 Pfam MutS domain V 827 1021 IPR000432 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 Pfam MutS domain I 256 363 IPR007695 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 785 1023 IPR027417 -
Apr6g1104 1084 MobiDBLite consensus disorder prediction 1 33 - -
Apr6g1104 1084 PIRSF Msh6 82 710 IPR017261 GO:0006298|GO:0030983
Apr6g1104 1084 PIRSF Msh6 713 1067 IPR017261 GO:0006298|GO:0030983
Apr6g1104 1084 Gene3D - 537 764 - -
Apr6g1104 1084 Pfam MutS domain III 541 758 IPR007696 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 MobiDBLite consensus disorder prediction 107 126 - -
Apr6g1104 1084 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 239 1076 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Apr6g1104 1084 Gene3D DNA repair protein MutS, domain I 212 369 IPR016151 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 Gene3D MutS, connector domain 370 536 IPR036678 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 SUPERFAMILY DNA repair protein MutS, domain I 242 360 IPR016151 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 ProSitePatterns DNA mismatch repair proteins mutS family signature. 904 920 IPR000432 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 SMART mutATP5 823 1019 IPR000432 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 PANTHER DNA MISMATCH REPAIR PROTEIN MSH7 239 1076 - -
Apr6g1104 1084 SMART DNAend 555 802 IPR007696 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 Pfam MutS domain II 371 452 IPR007860 GO:0005524|GO:0006298|GO:0030983
Apr6g1104 1084 CDD ABC_MSH6_euk 790 1014 - -
Apr6g1104 1084 Gene3D - 768 1029 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1104 Apr-Chr6 15721833 15729961 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1104 K08737 - gmx:100818859 1729.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1104 6 15721833 15729961 Apr6g1104 6 15721833 15729961 ECH