Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1080 ATGGCCAGTAGACTAACTGAGATGGAAGCTGATCAATCACCTCAAATCAAAGGCGTTGTTATAATCTCTCTTCCACCCTCTGATAGCCCTTCTTTGGGTAAAACAATCACTGCTTTTACTTTCTCTGATCCTTCTTCTCTTCCATCTCAACCTTCTCTGCAACCCCATCAACATCAAACTCATCCCAATGTTCAGAACAGTAATCTTCCACTTCAATCCCACCCATCAAATCCTCAGCTTGGGTTTTCGTTCAGAAGATTCTTTCATGGCACCCCAATCAAGCTATTTTCTTTTTTTGGTGTTCTTCTCTTTGCTCTTTTTATTTATGGTTCTGTTTCTTCAACTATTACTCAAGAACTACGTGGTCCCAAGAACGATGATGACAAGTCCAGTTCCTTTCTCTTCCCCTTGTTTCCCAAATTTGGTATTTTGGGGCAGAAGGATGTGAAACTCAAAATGGGTAAGATTGTTGATGCTCAAAAAGTTAACTTTGTGACCCAAAGGAAAGTTGGTGTTGGTTCTGGGGTCATTGCCGTTGATTCATCTTCGGTTTTCCCAGTCAGTGGCAACGTGTATCCTGATGGGTTGTATTTTACAATTTTGCATGTTGGAAATCCTCCAAAAAGGTATTTTCTTGATGTCGATACTGGGAGTGACTTAACTTGGATCCAATGTGATGCTCCATGCAGAAGTTGTGGGAAGGGAGCACATGTCCTGTACAAGCCAACAAGGTCCAATGTAGTGCCATTTATGGATTCTCTTTGCTTGGATGTTAAAGAAAATCAGAAGAATGGATATCATGATAATTTGCAACAGTGTGACTATGAAATTCAGTATGCTGACCATAGTTCTTCCTTGGGGGTTCTTATTAGAGACGAGCTTAATCTTATAACTACCAATGGATCCAAAACAAAGCTAAATTTTGTTTTTGGGTGTGGATATGATCAAGAAGGCTTACTTTTGAACACATTGGCAAAAACTGATGGAATCATGGGACTGGGAAGAGCAAAAGTGGGCCTACCTTACCAGTTGGCTAGTAAAGGACTAATTAGGAATGTGGTTGGTCATTGCCTTAGCAGTGATGGAGTTGGTGGTGGATACATGTTCTTGGGTGATGATTTTGTGCCATATTGCGGTATGACTTGGGTTCCCATGCCCAATACCCACACTACAGATTTATACCAAACTGAGATTCTTGGAATTAATTATGGAAATCAACCACTCAGATTTGATGGCCAAAGCAAAGTAGGAAAAGTGGTTTTTGATAGTGGCAGTTCTTATACTTATTTTACAAAAGAGGCTTACTCGGATCTTGTTGCTTCTCTTAATGAAGTTTCTGCGTTGGGACTGGTTCAAGATGATTCAGATACTACTTTACCCATTTGCTGGCAAGCTAATTTCCCAATCAAATCTGTCAAAGATGTTAAGGACTACTTCAAAACCTTAACTTTTCGGTTTGGAAGCAAGTGGTTGATTTTGTCCACATTGTTTCAGATACCTCCAGAGGGTTACTTGATCATTAGCAGCAAGGGCCATGTGTGCTTGGGTATTCTTGATGGTAGTAATGTAAATGATGGATCTGTAATTATACTCGGAGACATTTCATTGCGAGGGTATTTGGTTGTCTATGATAATTTGAACCAGAAAATAGGTTGGAAACATGCAGATTGTGGCATGCCAAGCAGAAGATTGAAAAGCTGA 1701 0.4009 MASRLTEMEADQSPQIKGVVIISLPPSDSPSLGKTITAFTFSDPSSLPSQPSLQPHQHQTHPNVQNSNLPLQSHPSNPQLGFSFRRFFHGTPIKLFSFFGVLLFALFIYGSVSSTITQELRGPKNDDDKSSSFLFPLFPKFGILGQKDVKLKMGKIVDAQKVNFVTQRKVGVGSGVIAVDSSSVFPVSGNVYPDGLYFTILHVGNPPKRYFLDVDTGSDLTWIQCDAPCRSCGKGAHVLYKPTRSNVVPFMDSLCLDVKENQKNGYHDNLQQCDYEIQYADHSSSLGVLIRDELNLITTNGSKTKLNFVFGCGYDQEGLLLNTLAKTDGIMGLGRAKVGLPYQLASKGLIRNVVGHCLSSDGVGGGYMFLGDDFVPYCGMTWVPMPNTHTTDLYQTEILGINYGNQPLRFDGQSKVGKVVFDSGSSYTYFTKEAYSDLVASLNEVSALGLVQDDSDTTLPICWQANFPIKSVKDVKDYFKTLTFRFGSKWLILSTLFQIPPEGYLIISSKGHVCLGILDGSNVNDGSVIILGDISLRGYLVVYDNLNQKIGWKHADCGMPSRRLKS* 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1080 566 Gene3D Acid Proteases 378 559 IPR021109 -
Apr6g1080 566 PANTHER ASPARTYL PROTEASE APCB1 23 560 - -
Apr6g1080 566 Pfam Xylanase inhibitor C-terminal 397 553 IPR032799 -
Apr6g1080 566 SUPERFAMILY Acid proteases 188 557 IPR021109 -
Apr6g1080 566 MobiDBLite consensus disorder prediction 44 72 - -
Apr6g1080 566 Pfam Xylanase inhibitor N-terminal 197 372 IPR032861 -
Apr6g1080 566 PRINTS Pepsin (A1) aspartic protease family signature 203 223 IPR001461 GO:0004190|GO:0006508
Apr6g1080 566 PRINTS Pepsin (A1) aspartic protease family signature 419 430 IPR001461 GO:0004190|GO:0006508
Apr6g1080 566 PRINTS Pepsin (A1) aspartic protease family signature 529 544 IPR001461 GO:0004190|GO:0006508
Apr6g1080 566 Gene3D Acid Proteases 178 372 IPR021109 -
Apr6g1080 566 PANTHER ASPARTYL PROTEASES 23 560 IPR001461 GO:0004190|GO:0006508
Apr6g1080 566 ProSiteProfiles Peptidase family A1 domain profile. 197 553 IPR033121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1080 Apr-Chr6 15460119 15466677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1080 179 557 Miscellaneous Gene Families AT1G77480 46.214 9.75e-111 336
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1080 - - gmx:100783933 915.605
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1080 6 15460119 15466677 Apr6g1080 6 15460119 15466677 ECH