Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1054 ATGCGGTCTTCTTCTTCGGACAGGATCAACATCGCTGCCAGTGCTCAGAAACTCGATGTTGATAATCGAATCTCTCTCCGTTTCTACTACCGCATCGCCGATAACATCCTCCGACAGGCTGACATATTTCGTGCAGAGAAGAATATTATTGACCTATATGTCATGCTTCTAAGATTTTCTAGTTTGGCCACTGAGACAATACCACGTCACCGAGATTATAGATCATCTCCACAAATCAAGAAAGAATCGTTGAAAAAGAAATTGTTAATTTCTTTGAATGAACTGGAGAAGTTGAAGCCAGGAGTCCAACAGAAGATCAATGAACTCAACAGCAAACATGCATACCAACCAAATGGGCAGGGAAAATTTAATTCAAATAATTCACTTGATTTCGCACCTGTGAAAAAGCAAACTTTGGGTAGTAATGGCCAAATAAAGGCAGTCAGACCATCTGCTGGGGAGCTTGTTTACCAAGGATCAAGGAGCCAACAGTTCTCTTATGGCAGGCCTGTGGGAGAGCATGCACGGAGACTATGTCTAACTCTTCCACCTCCAAAGGAGGAAACTCTTTCTAGACATTCTATCCTTGGTCCCAATGGGCTTAATGGGCAGTGGAGACCACCAACGACTGATAAAGGGGTCAGGTATCCAACCAACATAGATCTTTCTCCAGTTAAAATACCAAGCCTAGTAAATCCCCTGGAAGATGAATCTCTGAATAAAAAAGATAATAACATTGCCGAACACAGTAAATCAGATTTTGATTCAATTCTTATCCAAAGTGAGGACTGCCAGCCCCAGCCTCAGCCTCAGCCTCAGCATGATCAGGAGCCTCCTTCTCTTATTTCTTTTGAAACAACAGAAACCTCTGCTCAAATAGAAGTTATCAGACAGCCTTCTCCTCCACCTGTACTTGCTGAAGTCCAAGATTTGTTCCCTGCAGTGTCACTTCTTGTTAATGAAGCAGAATGCAAGACAGAAATTCCATCATCAGATGGCTCTGTTAATGCTGAGTCCCCTCTCCAACTGCACATTTCAACTGCTTTGATGGAGAGTTTTATGAAGCTTGCCAAGTCGAATACCAAAAGAAATTTAGAGACTTGTGGTGTCCTTGCTGGTTTGCTAAAAAACAGAAAATTCTATATTACTGCCCTTATAATCCCAAAGCAGGAGTCAACTTCAGATTCTTGTCAGACTACAAATGAAGAGGAAATATTTGAAGTGCAGGACAAACGATCCCTTTTCCCCCTTGGGTGGATCCATACACATCCTACGCAATCTTGTTTCATGTCATCAATTGATCTGCACACTCATTACTCCTATCAGATTATGCTGCCAGAAGCTGTTGCAATAGTCATGGCGCCAAGAGATAGTTCAAGAAACCATGGCATTTTTCGGTTGACAGCCCCTGGTGGAATGTCTGTCATTAAACAATGCCAGCAACGTGGCTTTCATCCACATAATCAGCCTCCAGATGGTGGTCCTATTTACAAGACCTGTACAGATGTTTATATGAACCCAGACTTAAAATTTGATGTCATTGATCTTCGATGA 1554 0.4221 MRSSSSDRINIAASAQKLDVDNRISLRFYYRIADNILRQADIFRAEKNIIDLYVMLLRFSSLATETIPRHRDYRSSPQIKKESLKKKLLISLNELEKLKPGVQQKINELNSKHAYQPNGQGKFNSNNSLDFAPVKKQTLGSNGQIKAVRPSAGELVYQGSRSQQFSYGRPVGEHARRLCLTLPPPKEETLSRHSILGPNGLNGQWRPPTTDKGVRYPTNIDLSPVKIPSLVNPLEDESLNKKDNNIAEHSKSDFDSILIQSEDCQPQPQPQPQHDQEPPSLISFETTETSAQIEVIRQPSPPPVLAEVQDLFPAVSLLVNEAECKTEIPSSDGSVNAESPLQLHISTALMESFMKLAKSNTKRNLETCGVLAGLLKNRKFYITALIIPKQESTSDSCQTTNEEEIFEVQDKRSLFPLGWIHTHPTQSCFMSSIDLHTHYSYQIMLPEAVAIVMAPRDSSRNHGIFRLTAPGGMSVIKQCQQRGFHPHNQPPDGGPIYKTCTDVYMNPDLKFDVIDLR* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1054 517 PANTHER AMSH-LIKE PROTEASE 1 517 - -
Apr6g1054 517 SUPERFAMILY USP8 N-terminal domain-like 23 119 - -
Apr6g1054 517 SMART pad1_6 342 470 IPR000555 GO:0005515|GO:0008233|GO:0008237
Apr6g1054 517 ProSiteProfiles MPN domain profile. 343 473 IPR037518 -
Apr6g1054 517 Coils Coil 92 112 - -
Apr6g1054 517 Pfam USP8 dimerisation domain 11 102 IPR015063 -
Apr6g1054 517 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 1 517 - -
Apr6g1054 517 Gene3D - 4 126 - -
Apr6g1054 517 CDD MPN_AMSH_like 342 517 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Apr6g1054 517 Gene3D Cytidine Deaminase, domain 2 324 517 - -
Apr6g1054 517 MobiDBLite consensus disorder prediction 185 219 - -
Apr6g1054 517 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 340 446 IPR000555 GO:0005515|GO:0008233|GO:0008237
Apr6g1054 517 SUPERFAMILY JAB1/MPN domain 342 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1054 Apr-Chr6 15230009 15235988 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1054 K11866 - gmx:100804754 892.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1054 6 15230009 15235988 Apr6g1054 6 15230009 15235988 ECH