Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1048 ATGGCTGCAAAAAGGTTTTTCAATGATTCTGATCAAGACCCTGATAAGCTAAGTGACAAACGGATGAAGACTAATAGACCTTCTTTTGCTTCAGTGATAGGTGAAGTGGTTATGGTGAAAAACGTGCAGAACCTTTTATCAGCCATGGAACCGTTGCTTAAAAGAGTTGTGAGTGAAGAGGTTGAGAGAGTTATGAGACAATACTGTCCACTCTCCTCCTATAATAGATCTCCTTCATTGAGAATCGAAGCAATGGAGCAACCATCAAGCTTGCAACTCTCCTTCAACAAAAGGCTTTCCCTCCCTATTTTCACGGCTAGTAGGATTCTTGACACTGATGGGAACCCAATCAACGTACTTCTTGTGGACAAAAGCAATGGCCAAGTGGTCTCCACTAGTGTCCCACATGCCCTCAAGCTAGAGATTGTGGTTTTGGATGGTGATTTTCCACTTGGTGGTGATGATAATGAGCATTGGACGAGTGAGGAATTCAATAGCCACATAGTGAAGGCGAGAACTGGGAAGAGACCATTGCTTGCTGGAGAATTGAGTGTGACCATGAGAGATGGAATGGCACCAATTGGGGACATTGAGTTCACTGATAACTCAAGCTGGATTCGGGGTAGGAAGTTTAGGGTTGCAGTTAGGGTGGCACCTGGGAGTAATCATGGTGTTCGGATTCGTGAAGCCATGACTGAGGCATTTGTTGTTAAGGATCATCGTGGAGAATTGTACAAAAAGCACCACCCTCCAATGCTTCATGATGATATATGGCGCCTAGAGAAGATTGGGAAAGATGGAGCTTTCCATAGAAAGTTGTCCTCCGCGGGGATCAAAACAGTGCAAGAATTTCTCAAATTAGCAGTTGTTGATACTCCTAAGCTAAGAAGGATTTTAGGCCTTGGAATGTCAGACAAAATGTGGGAAGGCACAATCAAGCATGCAATGACTTGTGACATGGGGAGCAAGATCTACATATACCGTGGATCACAATTTACTCTTTTTCTGGATCCAATATGCAAATTAATTAGAGCTGATATCAATGGACAGACATTTTCCAACAGAGATCTTAGCCATATGATGAATAGGACCTATATAGACAAATTGGTGAGAGAAGCATATGCTAGATGGCATATGTTGGACGAAATTGATGCAGTGCTGAATGACAACATTGCTTTGTTAACCCAAGGTGATCAAACTGTGGAGCAATTTCCAAACTCTCAACCAGCATCAGTAGTCTCATATGATCAAAACCAATATTATGGTGACAAATCTGCCAGCTATGTAGCAAACAACAGTGCACAAATGGGATGCTGTGAGTGGTCACTGAATCAAGCCTATAGCACAGCACCATTTGCCAATGGCTTTCCTTTTCGTTTCTCAGGTTCACAATCAGATGGTGACATAACAGCTTCAGGTTCTGGCTCTGTAAACATTGATGGGGCCACAGGACAGAATTAG 1461 0.4292 MAAKRFFNDSDQDPDKLSDKRMKTNRPSFASVIGEVVMVKNVQNLLSAMEPLLKRVVSEEVERVMRQYCPLSSYNRSPSLRIEAMEQPSSLQLSFNKRLSLPIFTASRILDTDGNPINVLLVDKSNGQVVSTSVPHALKLEIVVLDGDFPLGGDDNEHWTSEEFNSHIVKARTGKRPLLAGELSVTMRDGMAPIGDIEFTDNSSWIRGRKFRVAVRVAPGSNHGVRIREAMTEAFVVKDHRGELYKKHHPPMLHDDIWRLEKIGKDGAFHRKLSSAGIKTVQEFLKLAVVDTPKLRRILGLGMSDKMWEGTIKHAMTCDMGSKIYIYRGSQFTLFLDPICKLIRADINGQTFSNRDLSHMMNRTYIDKLVREAYARWHMLDEIDAVLNDNIALLTQGDQTVEQFPNSQPASVVSYDQNQYYGDKSASYVANNSAQMGCCEWSLNQAYSTAPFANGFPFRFSGSQSDGDITASGSGSVNIDGATGQN* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1048 486 MobiDBLite consensus disorder prediction 467 486 - -
Apr6g1048 486 Pfam Calmodulin binding protein C-terminal domain 323 382 IPR046829 -
Apr6g1048 486 PANTHER OS02G0177800 PROTEIN 1 477 IPR012416 GO:0005516
Apr6g1048 486 Pfam Calmodulin binding protein central domain 252 318 IPR046830 -
Apr6g1048 486 PANTHER PROTEIN, PUTATIVE-RELATED 1 477 - -
Apr6g1048 486 MobiDBLite consensus disorder prediction 1 22 - -
Apr6g1048 486 Pfam Calmodulin binding protein-like N-terminal domain 91 240 IPR046831 -
Apr6g1048 486 MobiDBLite consensus disorder prediction 8 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1048 Apr-Chr6 15165733 15169881 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g1048 7 385 Calmodulin-binding Proteins AT5G57580 48.177 2.08e-118 360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1048 - - gmx:100803213 748.429
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1048 6 15165733 15169881 Apr6g1048 6 15165733 15169881 ECH
Apr2g1468 2 20717172 20721736 Apr6g1048 6 15165733 15169881 PCT