Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1023 ATGGGGATCCCTGGATTGAACAATCAAAATAATGGGCAGCAAAGGTTAGGCATAACTGAGCCCATTTCATTGGCTGGACCAACTGAGGAAGATGTCATCAAGACACGTGAGCTTGAGAAGTACCTGCAAGGTGTTGGATTGTATGAGAGTCAGCAAGAGGCTGTGGGTAGGGAGGAGGTGCTTGGCAGGCTGGACCAGATTGTGAAGATTTGGGTTAAAAACATTAGCCGTGCAAAGGGATTCAATGAACAACTGGTGCAAGAAGCAAATGCCAAGATTTTCACCTTTGGCTCTTATCGGCTAGGGGTGCATGGCCCTGGAGCTGATATAGATACTCTTTGTGTGGGACCTAGACATGCAACCAGAGATGAAGATTTCTTTGGTGAGCTACATAAGATGCTATCTGAGATGCAGGAAGTAACAGAATTGCACCCTGTGCCTGATGCTCATGTCCCTGTGATGAAATTCAAGTTTAATGGAGTTTCTGTAGATCTCCTGTATGCAAGATTGGCTTTGTGGGTTATTCCTGAAGACTTAGATATATCCCAGGAATCAATATTACAAAATGCAGATGAACAAACTGTTCTTAGTCTTAATGGTTGTAGAGTAACTGATCAAGTCCTGCGTTTGGTTCCAAATATTCAGACTTTTCGCACAACATTGAGATGCATGAGGTTTTGGGCAAAGCGTCGTGGTGTTTATTCAAATGTTGCAGGTTTTCTTGGTGGTATAAACTTGGCATTGCTTGTTGCTCGAATATGCCAGCTATATCCTAATGCACTACCTAATATGTTAGTGTCTCGATTCTTTAGGGTATATACTCAATGGCGATGGCCAAATCCAGTCATGCTTTGTGCTATTGAAGAAGGATCTCTTGGACTACCAGTCTGGGATCCTAGAAGAAATCCCAAGGATAGATATCATCTAATGCCTATAATTACTCCTGCTTATCCTTGCATGAACTCTACTTACAATGTGACATCAAGTACATTGCGTGTTATGTCAGAGGAGTTTCGGAGGGGAAGTGAAATATGTGAGGCTATGGACGCTAGCAAGGCTGATTGGGACACTCTTTTTGAGCCTTATCCCTTTTTTGAAGTTTACAAGAATTATCTACAGATAGACATTACAGCAGAGAACGAGGATGACCTTAGACAATGGAAAGGCTGGGTTGAGTCTCGTCTTCGCCAGTTAACGTTGAAAATTGAGAGGCACACTTATGGCATGCTTCAGTGTCATCCACATCCTGGTGAATTTTCAGACAAAACTAGAGCTTTCCACCACTGTTACTTTATGGGTTTGCAGCGTAAGCAAGGGGTTCCAGTGAATGAAGGTGAGCAATTTGATATAAGGCTAACTGTAGAAGAATTTAAGCATTCTGTCAACGCATACACTCTGTGGAAACCTGGAATGGATATCCATGTGTCCCATGTGAAACGCCGTAGCATACCTAACTTCATATTCCCTGGCGGTGTCCGACCATCATACACATCAAAAGGAAATAGTGAGAATAAACAAAGTTCCAAATTAAGGGTTTCTGGCCATGGTCAAACAGAAAAGCCTCAAGGAGGTAAAGCCGTTGCGATGGAAGTAGATGACGTTAGGAAGAGAAAGCGATCAGAGGACAACATGGATACTAACTCAAAGAATTCCAAGTCCCTTGTATCTTTACCTACCCCCAGCAGGGAATTTCATGATGATAGAATTCCTATAAGTGCTTCTAGTTCTTGTTCTATGAAATTTGATGAATCAGAAGTCAACAGTATGGGTGGACAAAAGAGTGAGAAACCTTGTCTTAAATCCCTTGGGGAAGTTCCTTCTGGGGATTGTGAGACCAATGGATCAGTGACAGGTAACCAACAAGTGAACCCCATAGTTGCAACTACTGATATATCTAATTCTAAAGAAGAAGAAAAGCTAGCCATTGAGAAAATTATGTCCGGTCCGTATGAAGCACATCAAACCTTCACTGAGGAACCTGATGAGCTTGAAGATGATATTGTGTATAAAAATCAAGTCAAAGATTATGGTGGGAGCATGAATATCAGCAACTTGGAATCTTCAAACTCAAAGTCTGCAGTGGCAGAAGAGCCTGTCATTTCAAAAGAAACTAATCTTTCGACTCATTTATGCTCCAATGATGGGTTGGAGGAGCTTGAGCCTGCTGAGTTGACAGCACCATTGTTAAGCGGGACTCCTGCACCTGCACCAATGAGGAAGCCTCTTATCAGGTTGAACTTCACCTCTTTAGGAAAAGCTGCTGACAAAAGTTCTTAG 2277 0.4238 MGIPGLNNQNNGQQRLGITEPISLAGPTEEDVIKTRELEKYLQGVGLYESQQEAVGREEVLGRLDQIVKIWVKNISRAKGFNEQLVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRDEDFFGELHKMLSEMQEVTELHPVPDAHVPVMKFKFNGVSVDLLYARLALWVIPEDLDISQESILQNADEQTVLSLNGCRVTDQVLRLVPNIQTFRTTLRCMRFWAKRRGVYSNVAGFLGGINLALLVARICQLYPNALPNMLVSRFFRVYTQWRWPNPVMLCAIEEGSLGLPVWDPRRNPKDRYHLMPIITPAYPCMNSTYNVTSSTLRVMSEEFRRGSEICEAMDASKADWDTLFEPYPFFEVYKNYLQIDITAENEDDLRQWKGWVESRLRQLTLKIERHTYGMLQCHPHPGEFSDKTRAFHHCYFMGLQRKQGVPVNEGEQFDIRLTVEEFKHSVNAYTLWKPGMDIHVSHVKRRSIPNFIFPGGVRPSYTSKGNSENKQSSKLRVSGHGQTEKPQGGKAVAMEVDDVRKRKRSEDNMDTNSKNSKSLVSLPTPSREFHDDRIPISASSSCSMKFDESEVNSMGGQKSEKPCLKSLGEVPSGDCETNGSVTGNQQVNPIVATTDISNSKEEEKLAIEKIMSGPYEAHQTFTEEPDELEDDIVYKNQVKDYGGSMNISNLESSNSKSAVAEEPVISKETNLSTHLCSNDGLEELEPAELTAPLLSGTPAPAPMRKPLIRLNFTSLGKAADKSS* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1023 758 Pfam Poly(A) polymerase predicted RNA binding domain 364 423 IPR007010 GO:0003723|GO:0043631
Apr6g1023 758 MobiDBLite consensus disorder prediction 680 699 - -
Apr6g1023 758 Pfam Nucleotidyltransferase domain 76 169 IPR002934 GO:0016779
Apr6g1023 758 Gene3D Poly(A) polymerase predicted RNA binding domain 363 478 - -
Apr6g1023 758 Gene3D Beta Polymerase, domain 2 49 205 IPR043519 -
Apr6g1023 758 MobiDBLite consensus disorder prediction 494 567 - -
Apr6g1023 758 PANTHER POLY(A) POLYMERASE-LIKE PROTEIN 1 717 - -
Apr6g1023 758 MobiDBLite consensus disorder prediction 1 18 - -
Apr6g1023 758 PANTHER POLY A POLYMERASE 1 717 - -
Apr6g1023 758 CDD NT_PAP_TUTase 57 211 - -
Apr6g1023 758 Gene3D - 17 359 - -
Apr6g1023 758 MobiDBLite consensus disorder prediction 495 515 - -
Apr6g1023 758 MobiDBLite consensus disorder prediction 1 21 - -
Apr6g1023 758 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 362 488 IPR011068 GO:0003723|GO:0016779|GO:0031123
Apr6g1023 758 Pfam Poly(A) polymerase central domain 17 361 IPR007012 GO:0004652|GO:0043631
Apr6g1023 758 MobiDBLite consensus disorder prediction 529 546 - -
Apr6g1023 758 SUPERFAMILY PAP/OAS1 substrate-binding domain 212 361 - -
Apr6g1023 758 SUPERFAMILY Nucleotidyltransferase 17 210 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1023 Apr-Chr6 14937543 14944076 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1023 K14376 - gmx:100816915 1347.41
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1023 6 14937543 14944076 Apr6g1023 6 14937543 14944076 ECH