Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g1002 ATGCCTACTGCTCCTATTTCAGCACGACCTTCCAATCGCCCATCATATGAAGAGATGATTTATAGGGCAATTGAGGCACTAAAGGAGAAGAATGGGTCAAGCAAGAGAGCGATAGGGAAATATATAGATCAAGTGTACAAGGACCAGTTGCCATCAACTCACTCCACCTTGTTGACTCACCACTTGAAGCGTTTGAAGAATAGTGGGTTTCTTGTCATGGTCAAGAAATCTTACAAGCTCTCTAGATCTGCTCATGTTCTTGCAACCACAACTTTTGCTGCCCCTTCTCAAGCCTCAAGGCCCAAGGGTCGACCGCGTAAGGTCCAATCCCAGCCTAAAGTTGAGGTTCCTGATGAAAACATGCAATTGAAAGTTGAGCCCATGTGGCTTACGTTTGGGCTCTCAGATGAGCGCAAGCAAGCCCAGGGCAGAAGGAGATACCCAACTCGTCCAAAGAAGAGTATAGTGCCTAGAGAAGAACATTTTGGCCCAACAAATGTAGCCCCTGCGCAAAAAAAACGTTCGCCTAGGTCTCAATCTGAAAAGACACTTAATCTTCCTCCTAAGACTAGGTCAGTCAAGGGAGTTGCTGACAAGCCCAAGAGACACCCAGGTCGTCCACCTAAGAATCATTCACAAGCGACTCAAATTCCTTTAGATCCAATTGAACCTATGCATTCAACTAAACTGCCAACTCAACCAATTAATGGTGATGTGGTTGCTCGCGTGGCTTTAAGGCCACGAGGACGACCAAAAAAGAATACTGTAGTGACGATGGCTGCTATTATTGCTGGTGCTCAAGGACAAAGTTGTAGGTATGACCACAATGGTGGTGGTGGACAAAGACAAGGAAAAGGGGGTAATGGATTACCTATGCAACCAAGAAAATCCACTGGAAAGCCTGTGGGTCGTCCAAAGAAGGGATCAACTTCTGCTAGTGCTTCTCAAAATGCTGCTAATGGAGGACTGAGGGGGAAACTTGAACACTTCCAATCAAAAGTCAAGCAATCTGTTGCAGTACTTAAGCCTCATTTTAACAAGGGAAGTCCAGTCACTGTGATTGCTGCTATTAAGGAGTTGGAAATGCTGGGAACTATGGACCTCAATGCACCATTGAAGGATGAGGCACTTCCACAGCCACCAAAACAGCAACAGATTCCCCTTAAGAATCAGGCCCATGCTAGGAAGAATTAA 1194 0.4573 MPTAPISARPSNRPSYEEMIYRAIEALKEKNGSSKRAIGKYIDQVYKDQLPSTHSTLLTHHLKRLKNSGFLVMVKKSYKLSRSAHVLATTTFAAPSQASRPKGRPRKVQSQPKVEVPDENMQLKVEPMWLTFGLSDERKQAQGRRRYPTRPKKSIVPREEHFGPTNVAPAQKKRSPRSQSEKTLNLPPKTRSVKGVADKPKRHPGRPPKNHSQATQIPLDPIEPMHSTKLPTQPINGDVVARVALRPRGRPKKNTVVTMAAIIAGAQGQSCRYDHNGGGGQRQGKGGNGLPMQPRKSTGKPVGRPKKGSTSASASQNAANGGLRGKLEHFQSKVKQSVAVLKPHFNKGSPVTVIAAIKELEMLGTMDLNAPLKDEALPQPPKQQQIPLKNQAHARKN* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g1002 397 MobiDBLite consensus disorder prediction 136 233 - -
Apr6g1002 397 SUPERFAMILY "Winged helix" DNA-binding domain 9 84 IPR036390 -
Apr6g1002 397 PANTHER HISTONE H1-LIKE 4 383 - -
Apr6g1002 397 SMART h15plus2 10 77 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr6g1002 397 MobiDBLite consensus disorder prediction 94 117 - -
Apr6g1002 397 CDD H15 10 84 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr6g1002 397 PANTHER HISTONE H1 4 383 - -
Apr6g1002 397 MobiDBLite consensus disorder prediction 270 320 - -
Apr6g1002 397 Pfam linker histone H1 and H5 family 14 76 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr6g1002 397 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 12 82 IPR005818 GO:0000786|GO:0003677|GO:0006334
Apr6g1002 397 SMART AT_hook_2 201 213 IPR017956 GO:0003677
Apr6g1002 397 SMART AT_hook_2 245 257 IPR017956 GO:0003677
Apr6g1002 397 SMART AT_hook_2 99 111 IPR017956 GO:0003677
Apr6g1002 397 SMART AT_hook_2 299 311 IPR017956 GO:0003677
Apr6g1002 397 Gene3D - 8 90 IPR036388 -
Apr6g1002 397 MobiDBLite consensus disorder prediction 371 397 - -
Apr6g1002 397 PRINTS AT-hook-like domain signature 99 109 IPR017956 GO:0003677
Apr6g1002 397 PRINTS AT-hook-like domain signature 199 210 IPR017956 GO:0003677
Apr6g1002 397 PRINTS AT-hook-like domain signature 243 253 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g1002 Apr-Chr6 14700421 14704077 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g1002 - - aprc:113866754 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g1002 6 14700421 14704077 Apr6g1002 6 14700421 14704077 ECH