Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0999 ATGGCTGTGGCTGATGCATTTGATGAAGAGTGTGATTACTTGTTCAAGGCTGTTCTGATTGGGGACTCTGGAGTTGGGAAATCAAATCTGATTTCAAGGTTTGCAAAAGATGAATTCAGGTTAGATTCCAAGCCAACCATAGGTGTGGAATTTGCTTACAGGAACATTAAGGTCAGGGACAAGCTTATCAAAGCACAAATATGGGACACTGCAGGCCAAGAGAGGTTTAGAGCTATCACAAGCTCATACTACAGAGGAGCGTTGGGGGCAATGCTAGTCTATGACATAACCAGGAGAGCAACTTTTGTGAATGTAAGAAAATGGTTACATGAATTAAGAGAGTTTGGAGAAGACATGGTGGTTATTTTGGTTGGAAACAAATCTGATTTGGGTCAATCAAGGGAAGTTGAGAAAGAAGAAGGAAAAGGGTTTGCACAAACAGAAGGGTTATGTTTCATGGAAACCTCTGCTTTGCAAAATATGAATGTTGATGAAGCATTCTTAGAAATGATCACTAAGATCCATGACATCATAAGCCAGAAAAGTTTGGAAACCAAAATTAATGGGACAACATTAAATCTTCCTAGTGGGAAGGAGATACATGTAGCCGATGAAGTCACTGCTACTAAACAAGCTAATTGTTGTTCATCATGA 654 0.396 MAVADAFDEECDYLFKAVLIGDSGVGKSNLISRFAKDEFRLDSKPTIGVEFAYRNIKVRDKLIKAQIWDTAGQERFRAITSSYYRGALGAMLVYDITRRATFVNVRKWLHELREFGEDMVVILVGNKSDLGQSREVEKEEGKGFAQTEGLCFMETSALQNMNVDEAFLEMITKIHDIISQKSLETKINGTTLNLPSGKEIHVADEVTATKQANCCSS* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0999 217 SMART ras_sub_4 12 177 - -
Apr6g0999 217 PRINTS Transforming protein P21 ras signature 15 36 - -
Apr6g0999 217 PRINTS Transforming protein P21 ras signature 38 54 - -
Apr6g0999 217 PRINTS Transforming protein P21 ras signature 56 78 - -
Apr6g0999 217 PRINTS Transforming protein P21 ras signature 117 130 - -
Apr6g0999 217 PRINTS Transforming protein P21 ras signature 152 174 - -
Apr6g0999 217 ProSiteProfiles small GTPase Rho family profile. 8 175 - -
Apr6g0999 217 TIGRFAM small_GTP: small GTP-binding protein domain 14 167 IPR005225 GO:0005525
Apr6g0999 217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 188 IPR027417 -
Apr6g0999 217 SMART rho_sub_3 17 177 IPR001806 GO:0003924|GO:0005525
Apr6g0999 217 ProSiteProfiles small GTPase Ras family profile. 9 217 IPR001806 GO:0003924|GO:0005525
Apr6g0999 217 CDD Rab11_like 12 175 - -
Apr6g0999 217 PANTHER DRAB5-RELATED 4 217 - -
Apr6g0999 217 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 4 217 - -
Apr6g0999 217 SMART rab_sub_5 15 177 - -
Apr6g0999 217 Gene3D - 7 215 IPR027417 -
Apr6g0999 217 SMART ran_sub_2 20 215 - -
Apr6g0999 217 ProSiteProfiles small GTPase Rab1 family profile. 10 215 - -
Apr6g0999 217 Pfam Ras family 16 175 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0999 Apr-Chr6 14652792 14657124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0999 16 167 EF-hand Containing Proteins AT5G27540 28.049 2.65e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0999 K07976 - gmx:100815793 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0999 6 14652792 14657124 Apr6g0999 6 14652792 14657124 ECH