Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0823 ATGAAGGAGAAGCTGAACGAACATGTGTTGGCAACACTAAGCAAAAGCAATCACCTGAACCATTTGAAGCAACTACAAGCCTACCTCATAACATTTGGTCACTCCCACACCAACTTCTACGCCTTCAAACTCGTTCGTTTCTGTGCTCTCACTCTCTCCAACCTCGCCTACGCTCGCCTCATCTTCGATCACCTTCACTCTCCCAACATCTATCTCTACACAGCCATCATCACCGCTTATGCTTCTCACCCCAACACTCACCCTTCTGCTTTTGCCCTTTTCCGCCACATGCTCTCTCTTTCTACCCCTCGCCCCAACCACTTCATCTACCCCCATGTCCTCAAAACTTGCTCTGACTCATGTTCCACCGGTTTGGTGCATACCCAGATATTAAAATCCGGTTTTGATCAATACCCTGTTGTGCAAACGGCTCTTGTCGATTCGTACTCGAGGGTTTTTGGTGGTTTGGGAAGTGCAAGGAACGTGTTTGATGAAATGTCTGAGAGAAATGTTGTGTCTTATACTGCTATGGTTTCTGGGTATGTGAGAGTTGGGGATTTTAATAATGCTGTGAGGTTGTTTGATGAAATGCCCGAGAGGGATGTGCCGTCTTGGAATGCTCTCATTGCTGGGTGTACTCAGAATGGGTTTTTCTACGAGGGAATTGGGTTGTTTAGGAAAATGGTTGTTCTTGCTGGGGAGAGAAGGGGTCAGGGTAACAAGCCGAACCAGGTTACTGTGGTTTGCACGCTCTCGGCTTGTGGTCACACAGGTATGCTTCAGCTTGGGAGATGGATACATGGTTATGTTTACAGGACTGGTTTTGTGCTTGACTCGTTTGTGTTGAATGCTCTTGTGGATATGTATGGGAAATGTGGTAACCTTGAGCAGGCAAGGAAGGTTTTTGAGATGAATCCAGAAAAGGGGCTGACTTCGTGGAATTCCATGATTAACTCTTTGGCACTCCATGGGCAGAGTGACAGAGCAATTGCTGTTTTTGGGGAAATGGTGGAGCATGGTGGTAATGTGAGACCGGATGAAGTCACCTTTATTGGTTTGTTAAATGCTTGCACTCATGGTGGATTGGTTGAACAAGGTTATTGCTATTTTGAGATGATGATTCGGGATTATGGAATAGAGCCTCGGATTGAGCACTATGGGTGTTTGATAGATCTTCTCGGTAGAGCAGGAAGATTTGATGAGGCAATGGAAGTTGTCAACGGTATGAGCATGGAGCCAGATGAGGTTGTTTGGGGTTCTTTGCTTAATGGATGTAAGGTTCATGGCCGTACAGATTTGGCAGAATTTGCAGCCAAAAAACTGATTGAAATTGATCCACATAATGGTGGTTATGGTATAATGTTGGCTAATATATATGGGGAGTTAGGGAAGTGGGATGCAGTTCGGAACGTGTGGAGGACCTTGAAGCAGCAAAAGTCTTATAAAATTCCAGGGTGCAGCTGGATTGAGATTGATGACCAGGTTCATCAGTTCTATTCTCTTGATAAATCTAATCCAAAGACTGAAGAGATGTACAGTGTCTTAGAAAGTCTCATTGGTTTTAGAAATGAAGTCATGGTTGAACTGTAG 1590 0.4484 MKEKLNEHVLATLSKSNHLNHLKQLQAYLITFGHSHTNFYAFKLVRFCALTLSNLAYARLIFDHLHSPNIYLYTAIITAYASHPNTHPSAFALFRHMLSLSTPRPNHFIYPHVLKTCSDSCSTGLVHTQILKSGFDQYPVVQTALVDSYSRVFGGLGSARNVFDEMSERNVVSYTAMVSGYVRVGDFNNAVRLFDEMPERDVPSWNALIAGCTQNGFFYEGIGLFRKMVVLAGERRGQGNKPNQVTVVCTLSACGHTGMLQLGRWIHGYVYRTGFVLDSFVLNALVDMYGKCGNLEQARKVFEMNPEKGLTSWNSMINSLALHGQSDRAIAVFGEMVEHGGNVRPDEVTFIGLLNACTHGGLVEQGYCYFEMMIRDYGIEPRIEHYGCLIDLLGRAGRFDEAMEVVNGMSMEPDEVVWGSLLNGCKVHGRTDLAEFAAKKLIEIDPHNGGYGIMLANIYGELGKWDAVRNVWRTLKQQKSYKIPGCSWIEIDDQVHQFYSLDKSNPKTEEMYSVLESLIGFRNEVMVEL* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0823 529 PANTHER - 3 521 - -
Apr6g0823 529 Gene3D Tetratricopeptide repeat domain 363 478 IPR011990 GO:0005515
Apr6g0823 529 Gene3D Tetratricopeptide repeat domain 259 362 IPR011990 GO:0005515
Apr6g0823 529 Pfam PPR repeat family 311 357 IPR002885 -
Apr6g0823 529 Pfam PPR repeat family 169 202 IPR002885 -
Apr6g0823 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 278 312 IPR002885 -
Apr6g0823 529 Pfam PPR repeat 385 409 IPR002885 -
Apr6g0823 529 Pfam PPR repeat 204 229 IPR002885 -
Apr6g0823 529 Pfam PPR repeat 282 304 IPR002885 -
Apr6g0823 529 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3 521 - -
Apr6g0823 529 Pfam E motif 431 490 IPR046848 -
Apr6g0823 529 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 170 204 IPR002885 -
Apr6g0823 529 Gene3D Tetratricopeptide repeat domain 83 234 IPR011990 GO:0005515
Apr6g0823 529 TIGRFAM PPR: pentatricopeptide repeat domain 172 202 IPR002885 -
Apr6g0823 529 TIGRFAM PPR: pentatricopeptide repeat domain 386 410 IPR002885 -
Apr6g0823 529 TIGRFAM PPR: pentatricopeptide repeat domain 312 340 IPR002885 -
Apr6g0823 529 TIGRFAM PPR: pentatricopeptide repeat domain 204 229 IPR002885 -
Apr6g0823 529 SUPERFAMILY TPR-like 171 472 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0823 Apr-Chr6 12713891 12715621 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0823 59 519 Glycoside Hydrolase AT3G49170 32.759 1.28e-89 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0823 - - gmx:100806937 879.396
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0823 6 12713891 12715621 Apr6g0823 6 12713891 12715621 ECH