Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0805 ATGAAAGCTTGCAATTGCATTCTACCCATTATTTACCCAACAAACCCAACCCCCATAACCTCACTCTCAGCTTCTCTTTTCACTCCAATGGCTTCCATTCCCACTATCTCTTCTTCTCTGCACACAATATCTCCTCACTCTTCATCCCATTCAAACCCATCTCTCACATCTCTCTTCGGAACCAGAATCACCCTCCAACGCGCCACGTCATCAACCCTTTTCCTCCTCAACAAGAATTGTCGTGCGACATCAGCAACTGTGTCGTTTAGCCTCCCAACCCCGAAACCCCTTTCGGATACGCCCGAGAAAACCCCAAAGTGGTCGGCGAGGGCTATAAAGTCTTATGCAATGGCGGAATTGGAAGCGAGGAAGCTCAAGTATCCCAACACAGGAACTGAGGCACTTCTCATGGGGATTTTGGTAGAAGGAACAAGTAGGGCTGCAAAATTCTTAAGAGCTAATGGAATTACTCTTTTCAAAGTACGTGAAGAAATAGTAGAACTACTTGGAAAGTCTGACTTATATTATTTCAGCCCTGAGCACCCTCCATTGACTGAACCAGCCCAGAAAGCCCTTGATTGGGCAATTGAGGAGAAATTGAAGTCAGGTGAAGGAGGAGAAATAAACGTGACATATATACTTCTAGGAATTTGGTCACAAAAAGAATCTGCAGGTCAACTGATATTGGCTGCTTTAGGTTTCAATGATGAAAAGGCCAAAGAACTTGCTAACATAATTGATGGAGATGTTGATTTGAGTTTCAAAAGGCAAGCATAA 777 0.4389 MKACNCILPIIYPTNPTPITSLSASLFTPMASIPTISSSLHTISPHSSSHSNPSLTSLFGTRITLQRATSSTLFLLNKNCRATSATVSFSLPTPKPLSDTPEKTPKWSARAIKSYAMAELEARKLKYPNTGTEALLMGILVEGTSRAAKFLRANGITLFKVREEIVELLGKSDLYYFSPEHPPLTEPAQKALDWAIEEKLKSGEGGEINVTYILLGIWSQKESAGQLILAALGFNDEKAKELANIIDGDVDLSFKRQA* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0805 258 ProSiteProfiles Clp repeat (R) domain profile. 101 249 IPR004176 -
Apr6g0805 258 Pfam Clp amino terminal domain, pathogenicity island component 118 170 IPR004176 -
Apr6g0805 258 Pfam Clp amino terminal domain, pathogenicity island component 208 242 IPR004176 -
Apr6g0805 258 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 31 255 - -
Apr6g0805 258 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 31 255 IPR044217 -
Apr6g0805 258 Gene3D - 106 253 IPR036628 -
Apr6g0805 258 SUPERFAMILY Double Clp-N motif 106 242 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0805 Apr-Chr6 12545404 12549268 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0805 - - gmx:100802336 372.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0805 6 12545404 12549268 Apr6g0805 6 12545404 12549268 ECH