Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0769 ATGGCCTCTTCGCGCCCTACCAATGTGGGAATCCTTGCTATGGACATTTATTTCCCTCCTACATGCGTCAACCAGGAAGCTTTGGAGGGTCATGATGGAGTGAGCAAAGGGAAATACACTATTGGGCTTGGACAAGATTGCATGGCCTTCTGCACTGAGGTTGAAGATGTTATCTCAATGAGTTTGACAGTTGTTACCTCACTTCTTGAAAAGTATAAAATTGATCCAAAACAAATTGGACGCTTGGAGGTTGGGAGTGAAACTGTCATTGACAAAAGCAAATCCATTAAGACCTTTCTGATGCAAGTATTTGAGGAAAGTGGTAATACTGACATTGAAGGTGTTGATTCAACAAATGCATGCTATGGAGGAACAGCGGCTTTGTTCAATTGTGTGAATTGGGTGGAGAGTAGTTCATGGGATGGACGCTATGGAATTGTCGTATGTACAGACAGTGCGGTATATGCTGAAGGACCTGCTCGTCCCACTGGAGGTGCAGCTGCAATTGCCATGCTTGTAGGGCCAGATGCTCCTATTGCCTTTGAAAGCAAACTCAGAGGCAGTTATATGTCTCATGTCTATGATTTTTACAAGCCAAATCTTGCAAGTGAATATCCAGTTGTTGATGGAAAGCTCTCACAGACATGTTATCTCATGGCACTTGATTCCTGCTATGGGCTCTTCTGTGAGAAATTTGAAAAATTGGAGGGGAGGCCTTTTTCAATGTCAGATTCTGATTATTTTGTTTTTCATTCTCCGTATAACAAGCTTGTCCAGAAAAGTTTTGGTCGGCTATACTTCAATAACTTCCTGAGAAATCCCAGTTTTGTTGATGAAGCTGCCAGGGAAACCCTAGCACCTTATACATCCTTATCTGGTGATGAGAGTTATAACAGTCGGGATCTTGAAAAGGCAAACCAGCAAGCTGCAAAACATCTATATGATGTGAAGGTGCAGCCCAGCACGCTAATTCCAAAGCAAGTTGGTAACATGTACACTGTATCTCTTTATGCAGCATTTGCATCTCTTCTTTACAATAAGCACAGCTCACTGGCAGGTAAACGAATAGTTATGTTTTCGTATGGAAGTGGTTTAACAGCCACACTTTTCTCCTTCCGCCTTCAAGAAGGTCAACATCCCTTTAACTTGTCAAACATTGTAACCATGATGAATGTTTCGGACAAGTTGATGCAGAGATTTGAGTTTCCTCCTGAAAAGTTTGTTGAAACTTTGAAGATCATGGAGCACCATTATGGGGCAAAGGACTTTGTGACTAGCGAGGACTGTAGCTACTTACCTCCGGGCACCTTTTATCTCACCAAAGTTGATTCCATGTACAGGAGATATTATGCCAAGAAAGACACCACGAGCCCATGA 1377 0.4248 MASSRPTNVGILAMDIYFPPTCVNQEALEGHDGVSKGKYTIGLGQDCMAFCTEVEDVISMSLTVVTSLLEKYKIDPKQIGRLEVGSETVIDKSKSIKTFLMQVFEESGNTDIEGVDSTNACYGGTAALFNCVNWVESSSWDGRYGIVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPIAFESKLRGSYMSHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYGLFCEKFEKLEGRPFSMSDSDYFVFHSPYNKLVQKSFGRLYFNNFLRNPSFVDEAARETLAPYTSLSGDESYNSRDLEKANQQAAKHLYDVKVQPSTLIPKQVGNMYTVSLYAAFASLLYNKHSSLAGKRIVMFSYGSGLTATLFSFRLQEGQHPFNLSNIVTMMNVSDKLMQRFEFPPEKFVETLKIMEHHYGAKDFVTSEDCSYLPPGTFYLTKVDSMYRRYYAKKDTTSP* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0769 458 SUPERFAMILY Thiolase-like 179 451 IPR016039 GO:0016746
Apr6g0769 458 Gene3D - 2 454 IPR016039 GO:0016746
Apr6g0769 458 ProSitePatterns Hydroxymethylglutaryl-coenzyme A synthase active site. 109 124 IPR000590 GO:0004421|GO:0008299
Apr6g0769 458 PANTHER 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE 1 453 - -
Apr6g0769 458 CDD init_cond_enzymes 8 372 - -
Apr6g0769 458 SUPERFAMILY Thiolase-like 8 176 IPR016039 GO:0016746
Apr6g0769 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase N terminal 5 178 IPR013528 -
Apr6g0769 458 TIGRFAM HMG-CoA-S_euk: hydroxymethylglutaryl-CoA synthase 6 453 IPR010122 GO:0004421|GO:0008299
Apr6g0769 458 Pfam Hydroxymethylglutaryl-coenzyme A synthase C terminal 179 453 IPR013746 GO:0004421|GO:0006084|GO:0010142
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0769 Apr-Chr6 12005925 12011154 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0769 K01641 - gmx:100794889 852.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0769 6 12005925 12011154 Apr6g0769 6 12005925 12011154 ECH