Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0734 ATGGGGAATTCATTTGGGTGCTCGGCTTCCGGCGAGAGGTTGGTGTCGGCGGCGAGGGATGGCGATTTGGTGGAGGCGAAGATGCTTCTGCAATTCAACCCTTGTCTTGCTAAGTACTCTACCTTCGGTGGCCTCAATTCTCCTCTTCATTTTGCAGCTTCCAAGGGCCATAACGAGATTGTGGCATTGTTGCTTGAAAATGGAGCTGATGTGAATTTGAGAAATTATTGTGGGCAGACTGCTTTGATGCAAGCTTGTAGATATGGTCATTGGGAAGTTGTACAAACCCTTCTGCTCTTCAGATGCAATGTTATGAAAGCAGATTATCTCAGTGGGAGGACAGCTCTTCACTTTGCAGCTGCCAATGGGCATGCAAGATGCATTAGACTTGTTGTGGCTGACTTTATTCCAAGTGCTCCTTATGAAGCTTTACCTGCTAGTATGGATGCTGAGGGTACTGGATCAAATACGAAAAGCAAACATGGACAAAGTGGGCTGTCCAAGTTTGTAAACAAGACAGCTGATGCTGGTATTACTGCCCTTCACTTGGCTGCATTAGATGGGTATTTTGATTGTGTACAACTGCTACTTGATCTTAATGCAAATGTGTCAGCTGCGACATTTCATTATGGAACTTCAACGGATTTGATAGGGGCTGGAAGTACTCCGTTGCATTATGCTGCTTGTGGAGGCAATTTAAAATGCTGTCAGATCCTCCTTGCAAGAGGTGCCAGTCGAATGACTTTGAATTGCAATGGGTTGCTTCCACTTGATGTTGCTAGGATGTGGGGGCGTCATTGGCTTGAACCACTGCTGGCACCCAGTTCTGATGCCATAATATCGACATTCCCATCTTCAAATTATTTGTCCTTGCCATTGATGAGTGTGCTTAACATAGCCAGAGAGTGTGGATTGCAATCAACTACAACCTCCTCTAATGAAATTGATGTTTGTGCTGTCTGCCTTGAGAGACCATGTTCAGTGGCTGCAGAAGGATGTAAGCATGAGCTATGTGTAAGATGCGCGCTCTATCTTTGCTCAACAAGCAATGTTTCCTCAGAAATGCTTGGCCCTCCTGGCTCTATCCCTTGCCCCCTTTGCAGACATGGAATTGTCTCTTTCATCAAATTACCGGGTTCCCGAGCAAAAGAAAATAAATTACCTGTCACTCTCAGCCTCTGTACCCCGTGCATGCTACATCCACGTTACCTAGATCGACCACCCATTTCTCGTGCATCAGAAATTAGAAGAAACCGTGTGGCTTCTGTTCCTTCAGAGATGCTTTGTCCTGTCACTTGTACTCCATTTCCATCCGTTGCACTTCCTCTATGTACATGCAATGATGGTCCTTGTCCATCATTTGAACCACAGGAAGCAGAAACACAAGATGAATCACCTCGTCACTCCCAAGCATCGACCATGGATCAGGATAAAACAGAAGGTCCAAGACCGGAGAAAACAACATGTTCAAGCATGTTTTGGGGTAGAAGAAGTTGCAGCAGAGAGCATCAATGCAATTCAGAAATAAATGCTTGA 1536 0.4538 MGNSFGCSASGERLVSAARDGDLVEAKMLLQFNPCLAKYSTFGGLNSPLHFAASKGHNEIVALLLENGADVNLRNYCGQTALMQACRYGHWEVVQTLLLFRCNVMKADYLSGRTALHFAAANGHARCIRLVVADFIPSAPYEALPASMDAEGTGSNTKSKHGQSGLSKFVNKTADAGITALHLAALDGYFDCVQLLLDLNANVSAATFHYGTSTDLIGAGSTPLHYAACGGNLKCCQILLARGASRMTLNCNGLLPLDVARMWGRHWLEPLLAPSSDAIISTFPSSNYLSLPLMSVLNIARECGLQSTTTSSNEIDVCAVCLERPCSVAAEGCKHELCVRCALYLCSTSNVSSEMLGPPGSIPCPLCRHGIVSFIKLPGSRAKENKLPVTLSLCTPCMLHPRYLDRPPISRASEIRRNRVASVPSEMLCPVTCTPFPSVALPLCTCNDGPCPSFEPQEAETQDESPRHSQASTMDQDKTEGPRPEKTTCSSMFWGRRSCSREHQCNSEINA* 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0734 511 Gene3D - 147 269 IPR036770 -
Apr6g0734 511 ProSiteProfiles Ankyrin repeat region circular profile. 111 132 - -
Apr6g0734 511 MobiDBLite consensus disorder prediction 455 489 - -
Apr6g0734 511 PANTHER HOMEOBOX PROTEIN WARIAI 1 511 - -
Apr6g0734 511 ProSiteProfiles Ankyrin repeat profile. 44 76 IPR002110 GO:0005515
Apr6g0734 511 ProSiteProfiles Ankyrin repeat region circular profile. 219 245 - -
Apr6g0734 511 Pfam Ankyrin repeats (many copies) 46 98 IPR002110 GO:0005515
Apr6g0734 511 Gene3D - 6 139 IPR036770 -
Apr6g0734 511 PANTHER E3 UBIQUITIN-PROTEIN LIGASE XBOS32 1 511 - -
Apr6g0734 511 Pfam Ankyrin repeat 112 130 IPR002110 GO:0005515
Apr6g0734 511 ProSitePatterns Zinc finger RING-type signature. 333 342 IPR017907 -
Apr6g0734 511 SUPERFAMILY Ankyrin repeat 14 272 IPR036770 -
Apr6g0734 511 SMART ANK_2a 44 73 IPR002110 GO:0005515
Apr6g0734 511 SMART ANK_2a 111 141 IPR002110 GO:0005515
Apr6g0734 511 SMART ANK_2a 176 205 IPR002110 GO:0005515
Apr6g0734 511 SMART ANK_2a 219 251 IPR002110 GO:0005515
Apr6g0734 511 SMART ANK_2a 77 106 IPR002110 GO:0005515
Apr6g0734 511 ProSiteProfiles Ankyrin repeat region circular profile. 44 75 - -
Apr6g0734 511 ProSiteProfiles Ankyrin repeat region circular profile. 176 205 - -
Apr6g0734 511 Pfam Ankyrin repeats (3 copies) 181 265 IPR002110 GO:0005515
Apr6g0734 511 PRINTS Ankyrin repeat signature 112 127 IPR002110 GO:0005515
Apr6g0734 511 PRINTS Ankyrin repeat signature 192 206 IPR002110 GO:0005515
Apr6g0734 511 ProSiteProfiles Ankyrin repeat profile. 176 208 IPR002110 GO:0005515
Apr6g0734 511 SUPERFAMILY RING/U-box 317 374 - -
Apr6g0734 511 ProSiteProfiles Ankyrin repeat profile. 219 251 IPR002110 GO:0005515
Apr6g0734 511 ProSiteProfiles Zinc finger RING-type profile. 318 368 IPR001841 -
Apr6g0734 511 ProSiteProfiles Ankyrin repeat profile. 111 132 IPR002110 GO:0005515
Apr6g0734 511 MobiDBLite consensus disorder prediction 460 484 - -
Apr6g0734 511 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 301 387 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0734 Apr-Chr6 11433571 11439256 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0734 74 282 Miscellaneous Gene Families AT5G60070 24.206 1.36e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0734 K19044 - gmx:100812809 945.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0734 6 11433571 11439256 Apr6g0734 6 11433571 11439256 ECH
Apr6g0734 6 11433571 11439256 Apr8g2217 8 32631625 32636748 PCT