Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0682 ATGTGGTGGCCATTCAGCAGAGAAGGAGCATCTGGGTTTTCTTCTTCTTCCACTGCAGAGCAAGTCACTCATGGCATTGATGGAAATGGCCTCACTGCTATTGTCACAGGGGCATCAAGTGGTATTGGTGCTGAGACTGCCCGTGTTCTTGCTATGCGTGGTATTCATGTAATTATGGGAGTAAGAAATATGAGTGCAGCAGAAGATGTTAAAGAAACAATACTGAAGGAGATTCCTACAGCTAAAGTTGATGTCATGGAGTTAGACCTTAGTTCAATGACATCTGTTCGGAAATTTGCATCAGAGTTCAATTCATCTGGTCTTCCATTGAACATTTTGATAAACAATGCGGGAATTATTGGACTCCCTTTCACGCTGTCTGAGGACAACATTGAACTACTCTTTGCCACGAATTACTTGGATACTATGAAGAAAACAGCATTTGCAAGTAAGAAACAAGGTCGAATTGTTAATGTCTCCTCATCTGGTCACAGGTTAACCTATCATGAAGGAATCCGTTTTGATAAAATTAATGATCAATCAAGTTATTGGAAATTCTGTGCGTATGGTCAATCAAAGCTTGCTAAAATTTTACATGCTAATGAACTTGCAAGACGTCTCAAGGAAGATGGGGTAGATATCACTGTTAATTCTCTTCATCCAGGAGCCATTGAAACCAATATTCATCGTCACCTAGTATTTAATGGTAATTACCACATTGCAATATTTGTTAAAATGTTGGCACGATATGTAATTAAAAATGTCCAACAGGGCGCGGCAACAACATGCTATGTAGCATTACACCCAGAAGTAAAGGGAATTAGTGGTGAGTATTTTGCAGATTGCAATATCAGCAAAACAAGCTCAAAGGGAAAAGACATTGATTTGGCTAAAAAACTCTGGGATTTTAGCATGAATTTGATCAAGTAA 930 0.3882 MWWPFSREGASGFSSSSTAEQVTHGIDGNGLTAIVTGASSGIGAETARVLAMRGIHVIMGVRNMSAAEDVKETILKEIPTAKVDVMELDLSSMTSVRKFASEFNSSGLPLNILINNAGIIGLPFTLSEDNIELLFATNYLDTMKKTAFASKKQGRIVNVSSSGHRLTYHEGIRFDKINDQSSYWKFCAYGQSKLAKILHANELARRLKEDGVDITVNSLHPGAIETNIHRHLVFNGNYHIAIFVKMLARYVIKNVQQGAATTCYVALHPEVKGISGEYFADCNISKTSSKGKDIDLAKKLWDFSMNLIK* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0682 309 CDD retinol-DH_like_SDR_c_like 30 301 - -
Apr6g0682 309 PANTHER RETINOL DEHYDROGENASE 3 309 - -
Apr6g0682 309 Gene3D - 25 309 - -
Apr6g0682 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 108 119 IPR002347 -
Apr6g0682 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 154 162 IPR002347 -
Apr6g0682 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 189 208 IPR002347 -
Apr6g0682 309 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 30 286 IPR036291 -
Apr6g0682 309 Pfam short chain dehydrogenase 32 163 IPR002347 -
Apr6g0682 309 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Apr6g0682 309 PRINTS Glucose/ribitol dehydrogenase family signature 108 119 IPR002347 -
Apr6g0682 309 PRINTS Glucose/ribitol dehydrogenase family signature 148 164 IPR002347 -
Apr6g0682 309 PRINTS Glucose/ribitol dehydrogenase family signature 189 208 IPR002347 -
Apr6g0682 309 PRINTS Glucose/ribitol dehydrogenase family signature 212 229 IPR002347 -
Apr6g0682 309 PANTHER SHORT-CHAIN DEHYDROGENASE TIC 32 3 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0682 Apr-Chr6 10365421 10370988 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0682 30 161 Lipid Metabolism Gene Families AT1G24470 33.099 1.19e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0682 - - gmx:100793843 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0682 6 10365421 10370988 Apr6g0682 6 10365421 10370988 ECH