Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0680 ATGTGGCCATTCAGCAGTAACGGAGCTTCTGGATTCTCCTCTTCTTCCACTGCCGAAGAAGTCACTCATCAAATAGATGACACTCGTCTCACTGCTATTGTCACAGGGGCATCGAGTGGTATTGGTGCTGAGACTGCCCGTGTTCTTGCTTTGCGTGGTGTCCATGTGATTATGGGAGTTATTGATTTAATTGGTGCAAGAAATGTGAAAGATGCAATCCTTAAAGAGATTCCCACAGCCAAAGTTGATATTATGGAGTTAGATCTTAGCTCAATGGCATCTGTTCGAGAATTTGCATCAAACTTCAATTCTACTGGTCTTCCATTGAACATTCTCATAAACAATGCAGGAATTTTTGCAGCCCCTTTCTCATTGTCTAAGGACAACATTGAACTGCAATTTGCCATAAATTACTTAGGTCATTTTCTCTTAACAAATCAGCTGTTGGATACTATGAAGAAAACAACAAGAGAAAGTAAGATTCAAGGAAGAATTGTTAATGTCGCCTCAACTGGTCATCAATTAACATATCGTGAAGGAATCCGTTTTGACAAAATTAATGATCAATCAAGCTATAATAGTTTGCTTGCATATGGGCAATCAAAGCTGGCGAACATTTTACATGCTAATGAACTTGCAAGGCGTCTCAAGGAAGAAGAGATAAATATTATTGCTAATTCTGTTCATCCGGGTGCTACTATGACCAATATTTACATTAATAACCGTTTGATTACAGTTATACATAATATGCTGGGGAGATATATAATTGACCTGGTAGGGAGATTTTTTATGAAGAGTGTGCATCAGGGAGCAGCGACAACATGTTATGTAGCTTTGCACCCACAGGTGAGTGGAATTAGTGGTGAGTATTTTGTGGATAGTAATATCGCCAAAGCATCCCCACCAGCAACAGACATGGATTTGGCCAAGAAACTTTGGGATTTCAGCATGAATTTGATTATGTAA 966 0.3903 MWPFSSNGASGFSSSSTAEEVTHQIDDTRLTAIVTGASSGIGAETARVLALRGVHVIMGVIDLIGARNVKDAILKEIPTAKVDIMELDLSSMASVREFASNFNSTGLPLNILINNAGIFAAPFSLSKDNIELQFAINYLGHFLLTNQLLDTMKKTTRESKIQGRIVNVASTGHQLTYREGIRFDKINDQSSYNSLLAYGQSKLANILHANELARRLKEEEINIIANSVHPGATMTNIYINNRLITVIHNMLGRYIIDLVGRFFMKSVHQGAATTCYVALHPQVSGISGEYFVDSNIAKASPPATDMDLAKKLWDFSMNLIM* 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0680 321 Pfam short chain dehydrogenase 31 173 IPR002347 -
Apr6g0680 321 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 298 IPR036291 -
Apr6g0680 321 Gene3D - 25 321 - -
Apr6g0680 321 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 320 - -
Apr6g0680 321 PANTHER RETINOL DEHYDROGENASE 2 320 - -
Apr6g0680 321 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Apr6g0680 321 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Apr6g0680 321 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Apr6g0680 321 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Apr6g0680 321 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Apr6g0680 321 CDD retinol-DH_like_SDR_c_like 31 313 - -
Apr6g0680 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 107 118 IPR002347 -
Apr6g0680 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Apr6g0680 321 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 198 217 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0680 Apr-Chr6 10294902 10301536 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0680 33 231 Acyl Lipid Metabolism Gene Families AT3G55290 30.374 2.21e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0680 - - gmx:100776100 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0680 6 10294902 10301536 Apr6g0680 6 10294902 10301536 ECH