Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0608 ATGAAACCTTTTCCTACGCTGACTCATCAATTTCCCAAGTTACAAGCCTTGGTTTCTTCAGTTCGAAAATCATTGAAATCCCCACAAGATCCAGTACTTGCTTTGGAACTTCTTGGCAAAGCATTAGACCATTACCCAGATATCAAAACCTTGAAAAATGTTCATTCCAAGGTTTTTAATCTCAATTTTCACGAAAACCCATCTCTGGGAATCAAACTCATGAGAGCTTATGCTGCCTGTGGAGAACCAGGGTTGGCACGCAAGGTGTTTGATGAAATTCCTGAAAGGAATGTTGTTTTCTATAATGTCATGATAAGAAGCTATGTGAATAACCATTGGTACAATGATGCATTACTTGTTTTCAGGGCCATGGTTAGTAACGGGTTTAGCCCTGATAATTATACCTTCCCTTGTGTTCTAAAGGCTTGCTCTTGCTCTGACAATTTGAGGTTTGGATTGCAGCTTCATGGAGCTGTATTGAAGGTTCGACTTGATTCAAATTTGTTTGTTGGAAATGGTCTCATTGCTATGTATGGTAAATGTGGGTGCCTACTGGAGGCACGGTTTATTCTTGATGAAATGCCAATCAGGGATGTTGTTTCCTGGAACTCAATGGTTTCTGGGTATGTGCAGAATATGCGGTTTGATGATGCTTTGGAGATTTGCCGGGAAATGGAGGGTATGAGACAAAAACCAGATGCAGGCACAATGGCCACTCTCATGCCAGCTGTAACTAATACTTCACCTGATAATGTTTTGTATGTTAAGGACATGTTTATGAATTTGGAGAAGAAGAGTTTGGTCTCGTGGAATGTGATGATAACTGTATATATGAAAAACTCAATGCCTGGAGAAGCTGTGGAATTATATTTACAAATGGAGAAAGGTGAAGTGGAACCAGATGCAATCACTTGTGCTAGTGTTCTTCCAGCATGTGGGGATCTTTCGGCTTTGTTGCTAGGAAGGAGGATTCATGAATATGTTGAGAGGAAGAAACTATGTCCAAATTTGCTGCTGGAGAATGCATTGATAGACATGTATGCCAGGTGTGGATGCCTACAAGATGCTAAAAAAGTGTTTGACAGGATGAAGTTTCGCGATGTTGCATCATGGACTTCATTAATATCTGCCTATGGCGTGACTGGACAAGGCTACAATGCTGTGGCACTCTTTACTGAAATGCAAAATTCTGGTCAAAGTCCAGATTCTATCGCCTTTGTTGCAATTCTCTCAGCATGTAGCCATGCAGGATTACTTGATGAAGGGAAGGTTTACTTTAAACAGATGACAGATGAATACAGAATAACACCAAGAATTGAACACTTTGCTTGCTTAGTAGATATTTTAGGACGCGCTGGGAAGGTAGAAGAGGCCTATAATTTTATTAAACAGATGCCAATGGAGCCTAATGAAAGAATTTGGGGGACACTGCTTAGTTCATGTCGGGTGTACTCCAATATGGATATTGGGCTTTTAGCAGCTGACAAACTACTTCAGTTGGCTCCTGAGGAATCAGGTTACTATGTGTTGTTATCTAATATTTATGCAAAGGCTGGTAGATGGAAAGAAGTAACAGCTATTCGATCACTAATGAAGAGAAGAAGAATTAGGAAAATGCCTGGCATCAGTAATGTTGAGCTGAACAATCAGGTTCACACCTTTCTTGCAGGTGACACGTCACACCCACAATCAAAGGAAGTATATGAAGAGCTAGGTGTGCTAGTGGGGAAGATGAAAGAGTTGGGTTATGTCCCTGAGACTGATTCTGCTCTTCATGATGTGGAGGAGGAGGATAAGGAATGCCATCTAGCTGTTCACAGTGAAAAGTTAGCTATTGTGTTTGCTATTTTGAATACCCAAGAATCTCCAATCAGAATTACCAAAAACCTTCGTGTTTGTGGAGATTGTCATATTGCTGCCAAGCTTATCTCCAAGATAGTTCAACGGGAAATTGTCGTGAGGGACACCAATCGATTCCACCATTTTAAGGATGGTATATGCTCTTGTGGTGATTATTGGTGA 2022 0.4075 MKPFPTLTHQFPKLQALVSSVRKSLKSPQDPVLALELLGKALDHYPDIKTLKNVHSKVFNLNFHENPSLGIKLMRAYAACGEPGLARKVFDEIPERNVVFYNVMIRSYVNNHWYNDALLVFRAMVSNGFSPDNYTFPCVLKACSCSDNLRFGLQLHGAVLKVRLDSNLFVGNGLIAMYGKCGCLLEARFILDEMPIRDVVSWNSMVSGYVQNMRFDDALEICREMEGMRQKPDAGTMATLMPAVTNTSPDNVLYVKDMFMNLEKKSLVSWNVMITVYMKNSMPGEAVELYLQMEKGEVEPDAITCASVLPACGDLSALLLGRRIHEYVERKKLCPNLLLENALIDMYARCGCLQDAKKVFDRMKFRDVASWTSLISAYGVTGQGYNAVALFTEMQNSGQSPDSIAFVAILSACSHAGLLDEGKVYFKQMTDEYRITPRIEHFACLVDILGRAGKVEEAYNFIKQMPMEPNERIWGTLLSSCRVYSNMDIGLLAADKLLQLAPEESGYYVLLSNIYAKAGRWKEVTAIRSLMKRRRIRKMPGISNVELNNQVHTFLAGDTSHPQSKEVYEELGVLVGKMKELGYVPETDSALHDVEEEDKECHLAVHSEKLAIVFAILNTQESPIRITKNLRVCGDCHIAAKLISKIVQREIVVRDTNRFHHFKDGICSCGDYW* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0608 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 666 - -
Apr6g0608 673 Pfam PPR repeat 444 466 IPR002885 -
Apr6g0608 673 Pfam PPR repeat 172 195 IPR002885 -
Apr6g0608 673 Pfam PPR repeat 341 366 IPR002885 -
Apr6g0608 673 Pfam PPR repeat 200 227 IPR002885 -
Apr6g0608 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 366 IPR002885 -
Apr6g0608 673 Pfam E motif 484 546 IPR046848 -
Apr6g0608 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Apr6g0608 673 Gene3D Tetratricopeptide repeat domain 253 318 IPR011990 GO:0005515
Apr6g0608 673 Gene3D Tetratricopeptide repeat domain 155 252 IPR011990 GO:0005515
Apr6g0608 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 15 666 - -
Apr6g0608 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Apr6g0608 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Apr6g0608 673 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Apr6g0608 673 TIGRFAM PPR: pentatricopeptide repeat domain 341 368 IPR002885 -
Apr6g0608 673 TIGRFAM PPR: pentatricopeptide repeat domain 100 132 IPR002885 -
Apr6g0608 673 TIGRFAM PPR: pentatricopeptide repeat domain 268 302 IPR002885 -
Apr6g0608 673 TIGRFAM PPR: pentatricopeptide repeat domain 370 402 IPR002885 -
Apr6g0608 673 Pfam PPR repeat family 367 414 IPR002885 -
Apr6g0608 673 Pfam PPR repeat family 266 312 IPR002885 -
Apr6g0608 673 Pfam PPR repeat family 96 143 IPR002885 -
Apr6g0608 673 Pfam E+ motif 551 571 IPR046849 -
Apr6g0608 673 Pfam DYW family of nucleic acid deaminases 582 673 IPR032867 GO:0008270
Apr6g0608 673 Gene3D Tetratricopeptide repeat domain 367 565 IPR011990 GO:0005515
Apr6g0608 673 Gene3D Tetratricopeptide repeat domain 23 154 IPR011990 GO:0005515
Apr6g0608 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0608 Apr-Chr6 8752876 8755475 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0608 62 673 Glycoside Hydrolase AT3G49170 37.443 9.16e-142 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0608 - - gmx:100787841 1220.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0608 6 8752876 8755475 Apr6g0608 6 8752876 8755475 ECH