Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0303 ATGATCACCATGCTTAGCAGCAATCTCTCTCTCTTTTCTCTGGTCACCTTTCTCTGCATTTGTTTCTACGTTGGAAGTTCCCATGCAAATAAGTGTGCTGAGACGGACAGGCAAGCTCTTCTTAAATTGAAAGACGGTTTCATTGATAAATGGAACTCTCTTGACTCATGGAAAGGTGAAGATTGCTGCAAGTGGGAAGGAATTTCATGCGATAATTTAACTGCTCATGTAACCAGCTTGGATCTCCGTCATTTCTCGCTCAAAGGTCAGATGGATTCTTCAATATGTGAACTGAAACATCTCACTTTCTTTTATCTCAGTCATAATGAATTAGAAGGAATGATCCCAAAGTGCATCGGCTCACTTGCTCAATTGATAGAGTTGAATCTTGCGTGGAATCATCTGCTTGGTGGCATTCCTCCAACTCTGCGGAACCTTTCCAACTTGCAAACTCTTGATCTTGCCTATAATTTCTTGCTTGCGAATGACCTTGAGTGGGTTTCTCGTCTTTCTACCTTGAAATACCTTGATCTGTCGCATCTGGATCTTAGTCAAAGTGCTAATTGGCTATCATCAATGAGCAAAATCTCTTCTCTGTCGGAGCTTCGTTTAGATGATTGTGGGATTGGTCAAGTCATTCCTAAATCTATTCCCCATAATAATTCTTCCACTTCTCTCAACACACTCAGTCTTTCGAACAATCAGTTAGACTCTTCAACCCTGTCATTGGTGCTGAATGTCAGCAAAGTCCTCACATATCTTGATCTCTCCTCTAACTCTTTGCAGCATAATATTCCAGATGGATTTGTAAACATGGTTTCTCTTTCCCATCTACGATCTCTATATCTCTCGCGTAATGAGCTTGAGGGTAACATACTAAAATATATTCCGAGTTTGTTTCAGCTTAAAGAGTTACGATTGGAAGGAAACGAATTGTCTGGCAAACCCGTTGACTACATACGACAGTTGTGCTCTGCACAAGATGGTTTAGAGGTTTTGGATCTCAGCTATAACCCGTTTAGTAGTGCACCATTTCCTGATTTTTCATGTCTTTCTTTCTTGAAGACATTATCACTTCGTTTTGCCAATATTGTTGAGTCGTTACCACAATCAGTTAGTAAACTTGCCTCGTTAGAGGAATTGGATCTTTCCAATAATCAGTTGAATGGGACACTTCCTTCCACTGTTTGGCAACTTTCTAGTCTTACGACACTGGTTCTCTCTTCAAACGAGTTGAACGGTGCAGACGTCATTCGTGAGTCGCATCTGTCAAATCTATCACATCTAGATCTCCGTGACAACCAACTAAGTGGATCACAACCGTTGTTTGAGATTAGTAAACTTGCCTCGCTAGAGGAGTTGGATCTTTCCTATAATCAGCTGAATGGGACACTTCCTTCCACTATTTGGCAACTTTCTAGTCTTCGGAGATTGGTGCTCTATTCAAACAAGTTGACTGGTGTCCTTCGTGAAGGGCATTTGTTTGAGATTGGTAAACTTGCCTCGTTAGAGGAATTGGATCTTTCCAATAATCAGTTGAATGGGACACTTCCTTCTACTATTTGGCAACTTTCTAGTCTTCGGAGAATGGTGCTCTCTTCAAACAAGTTGACTGGTGTGGATGTCATTCGTGAGGGGCATTTGTCAAACTTATCAGAGCTTGACATCGCATATAACCAATTAAGTGGATCACAACCATTATTCGAGATTAGTAAAATTGCCTCGCTAGAAACGCTGGATCTTTCCAATAATCAGTTGAACGGGACACTTCCGTATAATCTTTGGGGACTTTCTAATCTAACAAGTTTGTCTCTCTTCTCAAATAAATTGAATGGTGTCGTTGATGAATCACATTTATCAAACCTGTCTCAATTGGAAGATTTAAATTTAGCTGGAAATGCACTCACATTCAATTTTAATTCAAATTGGGTTCCACCGTTCCAACTCCAAATATTACTAGCATCATCATGCATCTTGGGTCCTATATTTCCAACATGGCTCAAGAACCAAAGAGAACTTAGGGTCTTGGATATCTCTCGGAGTGGTATTTCAGATTCATTGCCTAATTGGTTTTGGAACCTGTCTTCAAGTTTGTCGTACTTGAATGTTTCACATAACAAAATTAGTGGAGCATTTCCACTGTCGTTACCAAGTACAAAAGGAAATAGTATGGACCGGAATGTG 2184 0.4025 MITMLSSNLSLFSLVTFLCICFYVGSSHANKCAETDRQALLKLKDGFIDKWNSLDSWKGEDCCKWEGISCDNLTAHVTSLDLRHFSLKGQMDSSICELKHLTFFYLSHNELEGMIPKCIGSLAQLIELNLAWNHLLGGIPPTLRNLSNLQTLDLAYNFLLANDLEWVSRLSTLKYLDLSHLDLSQSANWLSSMSKISSLSELRLDDCGIGQVIPKSIPHNNSSTSLNTLSLSNNQLDSSTLSLVLNVSKVLTYLDLSSNSLQHNIPDGFVNMVSLSHLRSLYLSRNELEGNILKYIPSLFQLKELRLEGNELSGKPVDYIRQLCSAQDGLEVLDLSYNPFSSAPFPDFSCLSFLKTLSLRFANIVESLPQSVSKLASLEELDLSNNQLNGTLPSTVWQLSSLTTLVLSSNELNGADVIRESHLSNLSHLDLRDNQLSGSQPLFEISKLASLEELDLSYNQLNGTLPSTIWQLSSLRRLVLYSNKLTGVLREGHLFEIGKLASLEELDLSNNQLNGTLPSTIWQLSSLRRMVLSSNKLTGVDVIREGHLSNLSELDIAYNQLSGSQPLFEISKIASLETLDLSNNQLNGTLPYNLWGLSNLTSLSLFSNKLNGVVDESHLSNLSQLEDLNLAGNALTFNFNSNWVPPFQLQILLASSCILGPIFPTWLKNQRELRVLDISRSGISDSLPNWFWNLSSSLSYLNVSHNKISGAFPLSLPSTKGNSMDRNV 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0303 728 SMART LRR_bac_2 573 593 - -
Apr6g0303 728 SMART LRR_bac_2 375 395 - -
Apr6g0303 728 SMART LRR_bac_2 500 520 - -
Apr6g0303 728 SMART LRR_bac_2 327 348 - -
Apr6g0303 728 SMART LRR_bac_2 448 468 - -
Apr6g0303 728 SMART LRR_bac_2 695 719 - -
Apr6g0303 728 SUPERFAMILY RNI-like 251 563 - -
Apr6g0303 728 Gene3D Ribonuclease Inhibitor 546 721 IPR032675 -
Apr6g0303 728 Gene3D Ribonuclease Inhibitor 277 493 IPR032675 -
Apr6g0303 728 Gene3D Ribonuclease Inhibitor 187 276 IPR032675 -
Apr6g0303 728 Pfam Leucine Rich Repeat 575 593 IPR001611 GO:0005515
Apr6g0303 728 Pfam Leucine Rich Repeat 330 350 IPR001611 GO:0005515
Apr6g0303 728 SUPERFAMILY L domain-like 32 323 - -
Apr6g0303 728 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Apr6g0303 728 Gene3D Ribonuclease Inhibitor 494 545 IPR032675 -
Apr6g0303 728 SMART LRR_typ_2 375 399 IPR003591 -
Apr6g0303 728 SMART LRR_typ_2 448 472 IPR003591 -
Apr6g0303 728 SMART LRR_typ_2 423 445 IPR003591 -
Apr6g0303 728 SMART LRR_typ_2 275 302 IPR003591 -
Apr6g0303 728 SMART LRR_typ_2 573 597 IPR003591 -
Apr6g0303 728 SMART LRR_typ_2 98 121 IPR003591 -
Apr6g0303 728 SMART LRR_typ_2 122 146 IPR003591 -
Apr6g0303 728 SMART LRR_typ_2 548 570 IPR003591 -
Apr6g0303 728 SMART LRR_typ_2 500 524 IPR003591 -
Apr6g0303 728 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 16 89 - -
Apr6g0303 728 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 217 636 - -
Apr6g0303 728 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 80 316 - -
Apr6g0303 728 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 328 716 - -
Apr6g0303 728 SUPERFAMILY L domain-like 498 716 - -
Apr6g0303 728 SMART LRR_sd22_2 500 526 - -
Apr6g0303 728 SMART LRR_sd22_2 146 162 - -
Apr6g0303 728 SMART LRR_sd22_2 423 444 - -
Apr6g0303 728 SMART LRR_sd22_2 548 578 - -
Apr6g0303 728 SMART LRR_sd22_2 375 404 - -
Apr6g0303 728 SMART LRR_sd22_2 275 298 - -
Apr6g0303 728 SMART LRR_sd22_2 448 474 - -
Apr6g0303 728 SMART LRR_sd22_2 597 624 - -
Apr6g0303 728 SMART LRR_sd22_2 170 201 - -
Apr6g0303 728 SMART LRR_sd22_2 98 124 - -
Apr6g0303 728 SMART LRR_sd22_2 223 249 - -
Apr6g0303 728 Pfam Leucine rich repeat 354 412 IPR001611 GO:0005515
Apr6g0303 728 Pfam Leucine rich repeat 499 537 IPR001611 GO:0005515
Apr6g0303 728 Pfam Leucine rich repeat 76 135 IPR001611 GO:0005515
Apr6g0303 728 Pfam Leucine rich repeat 424 485 IPR001611 GO:0005515
Apr6g0303 728 PRINTS Leucine-rich repeat signature 378 391 - -
Apr6g0303 728 PRINTS Leucine-rich repeat signature 500 513 - -
Apr6g0303 728 Gene3D Ribonuclease Inhibitor 32 186 IPR032675 -
Apr6g0303 728 PANTHER PROTEIN, PUTATIVE-RELATED 328 716 - -
Apr6g0303 728 PANTHER PROTEIN, PUTATIVE-RELATED 16 89 - -
Apr6g0303 728 PANTHER PROTEIN, PUTATIVE-RELATED 217 636 - -
Apr6g0303 728 PANTHER PROTEIN, PUTATIVE-RELATED 80 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0303 Apr-Chr6 3177384 3179567 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0303 176 718 Receptor kinase-like Gene Family AT3G05370 29.009 1.06e-28 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0303 - - aprc:113867670 1357.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0303 6 3177384 3179567 Apr6g0303 6 3177384 3179567 ECH