Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0301 ATGATCACCATGCTTAGCAGCAAGATCTCTCTCTTTTCTCTGGTGACCTTTCTCTGCATTTGTTTCTACGTTGGAAGTTCCCATGCAAACAAGTGTGCTGAGACGGACAGGCAAGCTCTTCTTAAATTGAAAGACGGTTTCATTGATGAACGGAACTCTCTTGACTCGTGGAAAGGTGAAGATTGCTGCGAATGGGAAGGAATTTCATGCGATAATTTAACTGCTCATGTAACAACCTTGAATCTATGGGATTCCTGGCTCAGAGGTAAGATGGATTCTTCAATATGTGAACTGAAACATCTCACTTTCTTTGATATCAGTCTTAATGAAGTAGAAGGAGTGATCCCAAAGTGCATCGGTTCACTTGCTCAATTGATAGAGTTGAATCTTGCGAGGAATGATCTGGTTGGTGACATTCCTCCAACTCTGGGTAACCTTTCCAACTTGCAAACTCTTGACCTTCACGGTAATCATTTGCTTGCGAATGACCTTGAGTGGGTTTCTCATCTTTCTACTATGAAATACCTCGATCTTTCGCATGTGAATCTTAGTCAAAGTGCTAATTGGCTATCATCAATTAGCAAAATCCCATCTCTATTGGAGCTTCGTTTAGATGATTGTGTGATTAGTCAAGTCATTCCTAAATCTATTCCCCATATTAATTCTTCCACTTCTCTCAAAACTCTCAGTCTTTCACAGAATCAGTTAAACTCTTCAACTCTGTCACTGGTTCTGAAAGCCAGCAAAGTCCTCACATATCTTGATCTCTCCTATAACTCTTTGCAACATAATACTCCAGATGGATTTGTAAACATGGTTTCGCTTTCCCATCTACGATATCTAAATCTCTCGGGTAACGAGCTCGAGGGTAACATACTAAAATATATTCACACTCTGATTCAGCTTAAAGAGTTGCGATTGGATCAAAACAAATTGTCTGGCAAACCCGTTGACTACATAAGACAGTTTTGCTCTGCACGATATGGATTAGAGGTTTTGTATCTCGGCAATAACCCATTTAGCAGTGCACCACTTCCTGATTTTTCATGTCTTTCATCCTTGAAGGCATTATCACTTCGTGGTGCCAATATTGTTGGGTCGTTACCACAGTCGGTTAGTAAACTTGTCTCGCTAGAGGAATTGGTTCTTTCCAATAATTCATTGAATGGGACACTTCCTTCGATTGTTTGGCAACTTTCTAGTCTTCGGACGTTGGTTCTCTCTTCAAATGAGTTGAATGGTGTCGATGTCATTCGTGAAGCGCATCTGTCAAATCTATCACATCTAGATCTCCGTGATAACCAACTAAGTGGATCACAACCGTTGTTTGAGATTAGTAAACTTGCCTCGCTAGAGGAATTGGATCTTTCCGATAATCAGTTAAATGGGACACTTCCTTCTACTGTTTGGCAACTTTCTAGTCTTCGGACATTACTTCTCTCTTCAAACAAGTTGAACGGTGTAGATGTCATCCGTGAATTGCATGCGTCAAACTTATCATTTCTTGATCTTATGAATAATCAGTTAAGTGGATCACAACCATTGCTTGAGATTAGTAAACTTGTCTCGCTTGAGGAATTGTATCTTTCCAATAATCAGTTAAATGGGACATTTCCTTCTACTATTGGGCAACTTTGTAGTCTTAAAAGACTGTATCTCAACTCAAACAAGTTTAATGGTGTCGTCAAAGAATCACATCTATCAAATCTGTCTCAATTGCAATATTTGAATGTAGCTCAGAATGCACTTGCATTCAACTTTAATTCGAATTGGGTTCCACCATTCCAACTCGATGAATTAGCTGCATCATCATGCATTTTGGGTCCTAAATTTCCAACATGGCTCAAACAGCAAAGAAAACTTAGGTACTTGCAGATCTCTAATAGTGGCATTTCAGATTCATTTCCTAATTGGTTTTGGAACCTGCCTTCTAGATGGCTGTACTTGAATGTTTCACATAACAAAATTAGTGGAGCATTGCCACTATTGTTACCAAGTACAAAGGGAAAATACTATAATGCATGGGATTTTAGTTTCAACAATTTGTCCGGTCCATTGCCTCCTTTTCCAGAACTAGATGCTCTGATTCTTTCGAATAATATGTTCTCAGGGTCCATTACTTCTTTTTGCGCAACGTCACCAAGGAGATTAACTGTTCTCGACTTGTCTAGTAACCTACTGTCGGGCACACTTTCAGACTGTGGGAGGAAATTTGAAAGATTAAGTGTTCTAAATCTGGCAAAAAATAATTTATCAGGTAGCATACCCAAGTCATTTGGCACTTTACAACAAATTGTGTCGATTAATTTAAATAGTAACAACTTTTCTGGGGAAATTCCATCTTTGACCTTTTGTACTGAATTACGACTAATTGATTTCGGGAAAAACAATCTCCAAGGCACCTTGCCAGCATGGATAGGTCATAACTTGCGCAAATTGACGGTGTTGAGTCTAGAGGCAAATAAATTCCATGGAAACATACCTACGAGTCTATGTAATCTTTTATATCTTCAAGTATTGGATCTCTCTGAAAATAATATTACTGGGAAAATTCCACAATAA 2562 0.3876 MITMLSSKISLFSLVTFLCICFYVGSSHANKCAETDRQALLKLKDGFIDERNSLDSWKGEDCCEWEGISCDNLTAHVTTLNLWDSWLRGKMDSSICELKHLTFFDISLNEVEGVIPKCIGSLAQLIELNLARNDLVGDIPPTLGNLSNLQTLDLHGNHLLANDLEWVSHLSTMKYLDLSHVNLSQSANWLSSISKIPSLLELRLDDCVISQVIPKSIPHINSSTSLKTLSLSQNQLNSSTLSLVLKASKVLTYLDLSYNSLQHNTPDGFVNMVSLSHLRYLNLSGNELEGNILKYIHTLIQLKELRLDQNKLSGKPVDYIRQFCSARYGLEVLYLGNNPFSSAPLPDFSCLSSLKALSLRGANIVGSLPQSVSKLVSLEELVLSNNSLNGTLPSIVWQLSSLRTLVLSSNELNGVDVIREAHLSNLSHLDLRDNQLSGSQPLFEISKLASLEELDLSDNQLNGTLPSTVWQLSSLRTLLLSSNKLNGVDVIRELHASNLSFLDLMNNQLSGSQPLLEISKLVSLEELYLSNNQLNGTFPSTIGQLCSLKRLYLNSNKFNGVVKESHLSNLSQLQYLNVAQNALAFNFNSNWVPPFQLDELAASSCILGPKFPTWLKQQRKLRYLQISNSGISDSFPNWFWNLPSRWLYLNVSHNKISGALPLLLPSTKGKYYNAWDFSFNNLSGPLPPFPELDALILSNNMFSGSITSFCATSPRRLTVLDLSSNLLSGTLSDCGRKFERLSVLNLAKNNLSGSIPKSFGTLQQIVSINLNSNNFSGEIPSLTFCTELRLIDFGKNNLQGTLPAWIGHNLRKLTVLSLEANKFHGNIPTSLCNLLYLQVLDLSENNITGKIPQ* 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0301 853 Gene3D Ribonuclease Inhibitor 32 323 IPR032675 -
Apr6g0301 853 PRINTS Leucine-rich repeat signature 251 264 - -
Apr6g0301 853 PRINTS Leucine-rich repeat signature 448 461 - -
Apr6g0301 853 Pfam Leucine Rich repeat 275 294 IPR001611 GO:0005515
Apr6g0301 853 Pfam Leucine Rich repeat 836 850 IPR001611 GO:0005515
Apr6g0301 853 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 429 502 - -
Apr6g0301 853 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 498 853 - -
Apr6g0301 853 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 19 436 - -
Apr6g0301 853 PANTHER LRR RECEPTOR-LIKE KINASE 19 436 - -
Apr6g0301 853 PANTHER LRR RECEPTOR-LIKE KINASE 498 853 - -
Apr6g0301 853 PANTHER LRR RECEPTOR-LIKE KINASE 429 502 - -
Apr6g0301 853 Gene3D Ribonuclease Inhibitor 421 710 IPR032675 -
Apr6g0301 853 Gene3D Ribonuclease Inhibitor 324 420 IPR032675 -
Apr6g0301 853 SUPERFAMILY L domain-like 253 633 - -
Apr6g0301 853 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Apr6g0301 853 SUPERFAMILY L domain-like 520 852 - -
Apr6g0301 853 Pfam Leucine rich repeat 401 461 IPR001611 GO:0005515
Apr6g0301 853 Pfam Leucine rich repeat 523 583 IPR001611 GO:0005515
Apr6g0301 853 Pfam Leucine rich repeat 715 775 IPR001611 GO:0005515
Apr6g0301 853 SMART LRR_typ_2 275 295 IPR003591 -
Apr6g0301 853 SMART LRR_typ_2 122 145 IPR003591 -
Apr6g0301 853 SMART LRR_typ_2 375 399 IPR003591 -
Apr6g0301 853 SMART LRR_typ_2 299 322 IPR003591 -
Apr6g0301 853 SMART LRR_typ_2 423 445 IPR003591 -
Apr6g0301 853 SMART LRR_typ_2 146 169 IPR003591 -
Apr6g0301 853 SMART LRR_typ_2 448 472 IPR003591 -
Apr6g0301 853 SMART LRR_typ_2 521 545 IPR003591 -
Apr6g0301 853 SMART LRR_typ_2 810 834 IPR003591 -
Apr6g0301 853 SUPERFAMILY L domain-like 59 318 - -
Apr6g0301 853 Gene3D Ribonuclease Inhibitor 786 853 IPR032675 -
Apr6g0301 853 Gene3D Ribonuclease Inhibitor 711 785 IPR032675 -
Apr6g0301 853 SMART LRR_sd22_2 545 572 - -
Apr6g0301 853 SMART LRR_sd22_2 423 444 - -
Apr6g0301 853 SMART LRR_sd22_2 810 836 - -
Apr6g0301 853 SMART LRR_sd22_2 223 243 - -
Apr6g0301 853 SMART LRR_sd22_2 521 536 - -
Apr6g0301 853 SMART LRR_sd22_2 448 463 - -
Apr6g0301 853 SMART LRR_sd22_2 472 496 - -
Apr6g0301 853 SMART LRR_sd22_2 714 743 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0301 Apr-Chr6 3136373 3146501 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0301 16 803 Receptor kinase-like Gene Family AT5G46330 30.549 4.54e-68 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0301 - - aprc:113867747 1650.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0301 6 3136373 3146501 Apr6g0301 6 3136373 3146501 ECH