Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr6g0294 ATGATCACCATGCTTAGCAGCAATCTCTCTCTCTTTTCTCTGGTCATCTTTCTCTGCATTTGTTTCTACGTTGGAAGTTCCCATGCAAATAAGTGTGCTGAGACGGACAGGCAAGCTCTTCTTAAATTGAAAGACGGTTTCATTGATGAATTCAACTCTCTTGACTCATGGAAAGGTGAAGATTGCTGCGAGTGGGACGGAATTTCATGCGATAATTTAACTGCTAGTGTAACCGAATTGTATCTCCGTGATTGCTCGCTCAGAGGTAAGATGGATTCTTCAATATGTGAACTGAAACATCTTACTTTCTTTGATCTCAGTGGTAATGAAATAGAAGAAGTGATCCCAAAGTGCATCGGCTCACTTGCTCAATTGATAGTCTTGAATCTTGCGGGGAATAATCTGGTTGGTGGCATTCCTCCAACTCTGGGGAACCTTTCCAACTTGCAAACTCTTGATCTTTCCCATAATCATTTGAATGGGACCCTTCCTTCTACTATTTGGCAACTTTCTACTCTTCGGATGTTGGTGCTCTATTCAAACAACTTGACTGGTGTAGATATCATTCGTGAGGGGCATTTGTCAAACTTATCAGAACTTGACATTGCAGATAACCAATTGAGTGGATCACAACAATTATTCGAGATTAGTAAACTTGCCTCGTTAGAGAAATTGTATCTTTCCGATAATCAGTTGAATGGGACACTTCCTGCTACTGTTTGGCAACTTTCTAGTCTAAGGACATTGGATCTCTCTTCGAACGAGTTCAATGATGTGGATGTCATTCGTGATGTGCATCTGTCAAATCTATCAGAACTTTTCATCGCAGATAACCAATTAAGTGGATCACAACTGTTGTTAGAGATCAGTAAAATTGCCTCATTAGAAACGCTGGATCTTTCCAGAAATCAGTTGAACGGTGTCGTTAATGAATCATATCTATCAAACCTGTCTCAATTGAGATACTTGAATATAGCTGGGAATGCACTTACATTCAATTTTAATTCAAATTGGGTTCCACCGTTCCAACTCTATTCATTTTCTGCAGCATCATGCATTTTGGGTCCTAAATTTCCAACATGGCTCAGAAACCAAATAGAACTCGGTAACTTGGATATCTCTAACAGTGGTATTTCAGATTCATTTCCTAATTGGTTTGGGAACCTGTCTTCAGGTATTTCACACTTGAATGTTTCACATAACAAAATTAGTGGAGCATTGCCACTGTCGTTACCAAGGAAAAAACAAACCTACCATAATGTATGGGATTTAAGTTTCAACGATTTGTCGGGTCCATTGCCTCCATTCCCAGAACTAGATGCTCTGTTTCTCTCGAATAATAGGTTTTCAGGGTCCATTACTTCTTTTTGTGCAACGTCATCAGAGGCGTTAATTGTTCTCGACTTGTCTAGTAACTTACTAGCGGGGACACTTCCAGATTGTTGGGGGAGATTTCAATTTTTAGGTCATCTAAATCTGGCACAAAATAATTTATCAGGGAGGATACCCAAGTCATTTGCCACTTTACAAAATATTGGGTCTATTAATTTAAATAGCAACAACTTCTCTGGATCATTACCGGCATGGATAGGCCATAACTTGAGCCAATTGAACGTGTTGAGTTTAGAGGCAAATAAATTCAATGGAAGCATACCTACAAGCCTCTGTAATCTTTTATCTCTTCGAGTGTTGGATCTCTCTAACAATAATATTACGGGGAAAATTCCACAATGTCTCAGTCGCATAATTGTTTTGTCAAATACGTCGTTTTCAGGACCAACCTTGGTATATGGAGTACTCCCTGATGGGCCAGATAATTCCAGATTCATTGACAAAGCAATGTTGGAATGGAAAGGACAAAACAGAGAATTCAAGGAAAATCTAAAACATATGACAATCATTGATCTTTCTTGCAACCAATTAACAGGAGAGATACCAAAAAGTATAACAACACTTGCGGCATTAGCTGTCTTGAATCTCTCAAGAAATAATCTTACAGGATTCATTCCCGACAACATTGGTCATATGCAATGGTTGGAATCACTTGACTTGTCAAGAAACCATCTTTATGGAAGAATGCCAGCAAGCTTTTCAAATTTGACTTTTCTCAGTTACATGGACTTGTCTTTCAACAACTTGTCAGGTAAAATTCCACAAAGCACTCAGTTACAAACCTTTGATGCCTCTGTATATAAAGGAAATACTGGGCTTTGTGGTCCACCACTCCCAAATCATTGCCCAGGGGATGCTGTTTCGCCAAATGGAAGCGTAGATACAAATAATGTTGAAGAAGATGGAGACGAAAATGAACTCATAACCATTGGTTTTTACGTCACCTTGGGGTTTGGATTTTTTGTTGGATTCTGGGGTGTTTGTGGAACTTTAATTATAAAAAGTTCATGGAGACATGCATATTTTCAGTTCTTCAACAACATGAATGACTGGATATATGTGACACTCGTTGTCTTTATGGCTCGAATGAAAAGGAGATTTCAAGTTCAAGACTAA 2508 0.3876 MITMLSSNLSLFSLVIFLCICFYVGSSHANKCAETDRQALLKLKDGFIDEFNSLDSWKGEDCCEWDGISCDNLTASVTELYLRDCSLRGKMDSSICELKHLTFFDLSGNEIEEVIPKCIGSLAQLIVLNLAGNNLVGGIPPTLGNLSNLQTLDLSHNHLNGTLPSTIWQLSTLRMLVLYSNNLTGVDIIREGHLSNLSELDIADNQLSGSQQLFEISKLASLEKLYLSDNQLNGTLPATVWQLSSLRTLDLSSNEFNDVDVIRDVHLSNLSELFIADNQLSGSQLLLEISKIASLETLDLSRNQLNGVVNESYLSNLSQLRYLNIAGNALTFNFNSNWVPPFQLYSFSAASCILGPKFPTWLRNQIELGNLDISNSGISDSFPNWFGNLSSGISHLNVSHNKISGALPLSLPRKKQTYHNVWDLSFNDLSGPLPPFPELDALFLSNNRFSGSITSFCATSSEALIVLDLSSNLLAGTLPDCWGRFQFLGHLNLAQNNLSGRIPKSFATLQNIGSINLNSNNFSGSLPAWIGHNLSQLNVLSLEANKFNGSIPTSLCNLLSLRVLDLSNNNITGKIPQCLSRIIVLSNTSFSGPTLVYGVLPDGPDNSRFIDKAMLEWKGQNREFKENLKHMTIIDLSCNQLTGEIPKSITTLAALAVLNLSRNNLTGFIPDNIGHMQWLESLDLSRNHLYGRMPASFSNLTFLSYMDLSFNNLSGKIPQSTQLQTFDASVYKGNTGLCGPPLPNHCPGDAVSPNGSVDTNNVEEDGDENELITIGFYVTLGFGFFVGFWGVCGTLIIKSSWRHAYFQFFNNMNDWIYVTLVVFMARMKRRFQVQD* 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr6g0294 835 Pfam Leucine rich repeat 195 255 IPR001611 GO:0005515
Apr6g0294 835 Pfam Leucine rich repeat 630 689 IPR001611 GO:0005515
Apr6g0294 835 SUPERFAMILY L domain-like 61 409 - -
Apr6g0294 835 Gene3D Ribonuclease Inhibitor 32 190 IPR032675 -
Apr6g0294 835 SMART LRR_sd22_2 292 319 - -
Apr6g0294 835 SMART LRR_sd22_2 676 702 - -
Apr6g0294 835 SMART LRR_sd22_2 98 124 - -
Apr6g0294 835 SMART LRR_sd22_2 628 654 - -
Apr6g0294 835 SMART LRR_sd22_2 558 587 - -
Apr6g0294 835 SMART LRR_sd22_2 219 234 - -
Apr6g0294 835 SMART LRR_sd22_2 267 291 - -
Apr6g0294 835 SMART LRR_sd22_2 194 218 - -
Apr6g0294 835 SMART LRR_sd22_2 146 172 - -
Apr6g0294 835 SUPERFAMILY L domain-like 427 743 - -
Apr6g0294 835 ProSiteProfiles Leucine-rich repeat profile. 294 315 IPR001611 GO:0005515
Apr6g0294 835 Pfam Leucine Rich Repeat 560 580 IPR001611 GO:0005515
Apr6g0294 835 ProSiteProfiles Leucine-rich repeat profile. 560 582 IPR001611 GO:0005515
Apr6g0294 835 Gene3D Ribonuclease Inhibitor 191 421 IPR032675 -
Apr6g0294 835 Gene3D Ribonuclease Inhibitor 422 752 IPR032675 -
Apr6g0294 835 SMART LRR_typ_2 558 582 IPR003591 -
Apr6g0294 835 SMART LRR_typ_2 292 315 IPR003591 -
Apr6g0294 835 SMART LRR_typ_2 676 699 IPR003591 -
Apr6g0294 835 SMART LRR_typ_2 146 170 IPR003591 -
Apr6g0294 835 SMART LRR_typ_2 194 216 IPR003591 -
Apr6g0294 835 SMART LRR_typ_2 652 675 IPR003591 -
Apr6g0294 835 SMART LRR_typ_2 98 122 IPR003591 -
Apr6g0294 835 SMART LRR_typ_2 219 242 IPR003591 -
Apr6g0294 835 SMART LRR_typ_2 243 264 IPR003591 -
Apr6g0294 835 Pfam Leucine Rich repeats (2 copies) 124 161 IPR025875 -
Apr6g0294 835 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 20 125 - -
Apr6g0294 835 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 515 829 - -
Apr6g0294 835 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 266 527 - -
Apr6g0294 835 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 193 256 - -
Apr6g0294 835 PANTHER RECEPTOR-LIKE PROTEIN 12 ISOFORM X1 105 185 - -
Apr6g0294 835 PANTHER LRR RECEPTOR-LIKE KINASE 105 185 - -
Apr6g0294 835 PANTHER LRR RECEPTOR-LIKE KINASE 515 829 - -
Apr6g0294 835 PANTHER LRR RECEPTOR-LIKE KINASE 193 256 - -
Apr6g0294 835 PANTHER LRR RECEPTOR-LIKE KINASE 266 527 - -
Apr6g0294 835 PANTHER LRR RECEPTOR-LIKE KINASE 20 125 - -
Apr6g0294 835 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
Apr6g0294 835 PRINTS Leucine-rich repeat signature 149 162 - -
Apr6g0294 835 PRINTS Leucine-rich repeat signature 292 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr6g0294 Apr-Chr6 3060242 3063272 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr6g0294 32 764 Receptor kinase-like Gene Family AT3G05660 33.944 3.52e-102 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr6g0294 - K13466 aprc:113867658 1661.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr6g0294 6 3060242 3063272 Apr6g0294 6 3060242 3063272 ECH