Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Apr5g1891 | ATGGGTTTACCTTGGTATCGTGTTCATACTGTTGTATTAAATGATCCAGGCCGTTTGCTTTCTGTTCACATAATGCATACAGCTCTGGTTGCTGGTTGGGCTGGTTCGATGGCTCTATATGAATTAGCAGTTTTTGATCCCTCTGACCCTGTTCTTGATCCAATGTGGAGACAGGGTATGTTTGTTATACCCTTCATGACTCGTTTAGGAATAACCAATTCGTGGGGCGGTTGGAATATCACCGGGGGGACTATAACGAATCCGGGTATTTGGAGTTACGAAGGTGTGGCCGGAGCACATATTGTGTTTTCGGGCTTGTGCTTTTTAGCGGCTATCTGGCATTGGGTTTATTGGGATCTAGAAATTTTTTGTGATGAACGTACCGGAAAACCTTCTTTGGATTTGCCCAAAATTTTTGGAATTCATTTATTTCTTGCAGGAGTGGTTTGTTTTGGTTTTGGAGCATTTCATGTAACAGGATTGTACGGTCCTGGAATATGGGTGTCTGATCCTTATGGATTAACGGGAAGGGTACAATCCATAAATCCCGCATGGGGTGTGGAAGGTTTTGATCCTTTTGTTCCGGGGGGAATAGCTTCTCATCATATTGCAGCAGGAACATTGGGCATATTAGCGGGTCTTTTCCATCTTAGTGTGCGTCCACCGCAACGTCTATACAAAGGATTGCGTATGGGAAATATTGAAACCGTCCTTTCCAGCAGTATCGCTGCTGTCTTTTTTGCAGCTTTTGTTGTTGCTGGAACTATGTGGTATGGTTCAGCAACTACCCCCATTGAATTATTTGGTCCCACTCGTTATCAATGGGATCAAGGATACTTCCAGCAAGAAATATATCGAAGAGTTGGTGCTGGGCTAGCCGAAAATCAAAGTTTATCAGAAGCTTGGTCTAAAATTCCTGAAAAATTAGCTTTTTATGATTACATCGGCAATAATCCAGCAAAAGGGGGATTGTTTAGAGCGGGCTCAATGGATAATGGAGATGGAATAGCCGTTGGTTGGTTAGGGCATCCCATCTTTAGAGATAAAGAGGGGTGTGAACTTTTTGTACGCCGTATGCCTACTTTTTTTGAAACATTTCCGGTTGTTTTAGTAGACGGAGACGGAATTGTTAGAGCCGATGTTCCTTTTCGAAGGGCAGAATCGAAATATAGTGTCGAACAAGTAGGTGTAACTGTTGAGTTCTATGGTGGCGAACTCAATGGAGTCAGTTATAGTGATCCTGCTACTGTGAAAAAATATGCTAGACGTGCTCAATTAGGTGAAATTTTTGAATTAGATCGTGCTACTTTGAAATCAGATGGTGTTTTTCGTAGCAGTCCAAGAGGTTGGTTTACTTTTGGACATGCTTCGTTTGCTCTACTCTTCTTTTTCGGGCATATTTGGCATGGTGCTAGAACCTTGTTCCGAGATGTTTTTGCTGGGATCGACCCAGATTTGGATGCTCAAGTAGAATTTGGAGCATTCCAAAAACTTGGAGATCCAACTACAAGAAGACAGATATCAACAGATCTCAATCAATATAAAATAGGATTTATGGCTACACAAACTGTTGAGGGTAATTCTAAGTCTAGTCCAAGACGAACTATTGTAGGGGATTTATTAAAACCATTAAATTCAGAATATGGTAAAGTAGCTCCGGGGTGGGGAACTACTCCTTTGATGGGTGTTGCAATGGCTCTATTTGCGATATTTCTATCTATTATTTTGGAGATTTATAATTCGTCCATTTTACAGTTTACCTATCTCAATAAAGTCTATGATTGGTTCGAAGAACGTCTTGAGATTCAGGCGATTGTCGATGATATAACCAGTAAATACGTTCCTCCCCATGTAAACATATTTTATTGTTTAGGAGGAATTACACTTACTTGTTTTTTAGTCCAAGTAGCGACGGGATTTGCTATGACTTTTTATTATCGTCCGACTGTTACTGAAGCTTTTGCTTCTGTTCAATATATAATGACGGAGGCTAACTTTGGTTGGTTAATCCGATCAGTTCATCGATGGTCGGCAAGTATGATGGTCTTAATGATGATTCTGCACGTATTTCGCGTGTATCTCACAGGTGGCTTTAAAAAACCTCGCGAATTAACTTGGGTTACCGGTGTAGTTTTGGCTGTATTGACCGCATCTTTTGGTGTAACTGGTTATTCCTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAATTGTAACAGGCGTGCCCGAAGCTATTCCTGTAATAGGATCCTCTTTGGTAGAGTTATTACGCGGAAGTTCTAGTGTGGGACAATCCACCTTGACTCGTTTTTATAGTTTGCATACTTTTGTATTACCTCTTCTTACTGCCGTATTTATGTTAATGCACTTTCCAATGATACGTAAGCAAGGATGGATCTATAAGAATTCACCTATCCTAATAACAAAAAAACCTGACTTGAATGATCCTGTATTAAGAGCTAAATTGGCTAAAGGAATGGGTCATAATTATTATGGAGAACCTGCATGGCCCAATGATCTTTTATATATTTTTCCAGTAGTAATTCTGGGTACTATTGCCTGTAACGTAGGATTAGCGGTTCTAGAACCATCAATGATTGGAGAACCCGCGGATCCATTTGCAACTCCTTTGGAAATACTACCCGAATGGTATTTCTTTCCCGTATTTCAAATACTTCGTACAGTGCCCAATAAGTTATTAGGCGTTCTTTTAATGGTTTCGGTACCTATGGGATTATTAACAGTACCCTTTTTGGAAAATGTTAATAAATTCCAAAACCCATTTCGCCGTCCAGTAGCAACAACCATCTTTTTAATTGGTACCATAGTAGCCCTTTGGTTGGGTATTGGAGCAACATTACCTATTGAGAAATCTCTAATTTTAGGTCTTTTTTAA | 2898 | 0.4013 | MGLPWYRVHTVVLNDPGRLLSVHIMHTALVAGWAGSMALYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGITNSWGGWNITGGTITNPGIWSYEGVAGAHIVFSGLCFLAAIWHWVYWDLEIFCDERTGKPSLDLPKIFGIHLFLAGVVCFGFGAFHVTGLYGPGIWVSDPYGLTGRVQSINPAWGVEGFDPFVPGGIASHHIAAGTLGILAGLFHLSVRPPQRLYKGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPIELFGPTRYQWDQGYFQQEIYRRVGAGLAENQSLSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGSMDNGDGIAVGWLGHPIFRDKEGCELFVRRMPTFFETFPVVLVDGDGIVRADVPFRRAESKYSVEQVGVTVEFYGGELNGVSYSDPATVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTRRQISTDLNQYKIGFMATQTVEGNSKSSPRRTIVGDLLKPLNSEYGKVAPGWGTTPLMGVAMALFAIFLSIILEIYNSSILQFTYLNKVYDWFEERLEIQAIVDDITSKYVPPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEANFGWLIRSVHRWSASMMVLMMILHVFRVYLTGGFKKPRELTWVTGVVLAVLTASFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSSLVELLRGSSSVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMIRKQGWIYKNSPILITKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMIGEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPMGLLTVPFLENVNKFQNPFRRPVATTIFLIGTIVALWLGIGATLPIEKSLILGLF* | 966 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Apr5g1891 | 965 | Gene3D | plastocyanin oxidoreductase | 872 | 964 | - | - | |
| Apr5g1891 | 965 | ProSiteProfiles | Cytochrome b/b6 N-terminal region profile. | 592 | 803 | IPR005797 | GO:0009055|GO:0016020|GO:0016491 | |
| Apr5g1891 | 965 | TIGRFAM | cytb6/f_IV: cytb6/f complex subunit IV | 808 | 965 | IPR005870 | GO:0009767|GO:0042651|GO:0045156 | |
| Apr5g1891 | 965 | PANTHER | PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN | 1 | 506 | IPR000932 | GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684 | |
| Apr5g1891 | 965 | Pfam | Cytochrome b/b6/petB | 610 | 798 | IPR005797 | GO:0009055|GO:0016020|GO:0016491 | |
| Apr5g1891 | 965 | SUPERFAMILY | a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) | 813 | 961 | IPR036150 | GO:0009055|GO:0016020|GO:0016491 | |
| Apr5g1891 | 965 | Hamap | Cytochrome b6-f complex subunit 4 [petD]. | 806 | 965 | IPR005870 | GO:0009767|GO:0042651|GO:0045156 | |
| Apr5g1891 | 965 | Gene3D | Single helix bin | 814 | 871 | - | - | |
| Apr5g1891 | 965 | Gene3D | Cytochrome Bc1 Complex; Chain C | 589 | 805 | IPR027387 | - | |
| Apr5g1891 | 965 | SUPERFAMILY | Transmembrane di-heme cytochromes | 594 | 798 | IPR016174 | GO:0016020|GO:0022904 | |
| Apr5g1891 | 965 | SUPERFAMILY | Photosystem II antenna protein-like | 2 | 488 | IPR036001 | GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684 | |
| Apr5g1891 | 965 | Hamap | Cytochrome b6 [petB]. | 589 | 803 | IPR023530 | - | |
| Apr5g1891 | 965 | Hamap | Photosystem II CP47 reaction center protein [psbB]. | 1 | 509 | IPR017486 | GO:0009523|GO:0009772|GO:0015979|GO:0016020|GO:0016168|GO:0045156 | |
| Apr5g1891 | 965 | Pfam | Cytochrome b(C-terminal)/b6/petD | 870 | 958 | IPR005798 | GO:0009055|GO:0016020|GO:0016491 | |
| Apr5g1891 | 965 | PANTHER | PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN | 1 | 506 | - | - | |
| Apr5g1891 | 965 | Gene3D | Photosystem II CP47 reaction center protein | 272 | 444 | - | - | |
| Apr5g1891 | 965 | CDD | Cytochrome_b_N | 602 | 798 | IPR005797 | GO:0009055|GO:0016020|GO:0016491 | |
| Apr5g1891 | 965 | SUPERFAMILY | Photosystem II 10 kDa phosphoprotein PsbH | 532 | 584 | IPR036863 | GO:0009523|GO:0015979|GO:0016020|GO:0042301|GO:0050821 | |
| Apr5g1891 | 965 | CDD | cytochrome_b_C | 819 | 965 | IPR005798 | GO:0009055|GO:0016020|GO:0016491 | |
| Apr5g1891 | 965 | Hamap | Photosystem II reaction center protein H [psbH]. | 531 | 591 | IPR001056 | GO:0009523|GO:0015979|GO:0016020|GO:0042301|GO:0050821 | |
| Apr5g1891 | 965 | TIGRFAM | PS_II_CP47: photosystem II chlorophyll-binding protein CP47 | 1 | 504 | IPR017486 | GO:0009523|GO:0009772|GO:0015979|GO:0016020|GO:0016168|GO:0045156 | |
| Apr5g1891 | 965 | Pfam | Photosystem II protein | 1 | 500 | IPR000932 | GO:0009521|GO:0009767|GO:0016020|GO:0016168|GO:0019684 | |
| Apr5g1891 | 965 | Gene3D | Photosystem II reaction center protein H | 519 | 582 | IPR036863 | GO:0009523|GO:0015979|GO:0016020|GO:0042301|GO:0050821 | |
| Apr5g1891 | 965 | ProSiteProfiles | Cytochrome b/b6 C-terminal region profile. | 870 | 965 | IPR005798 | GO:0009055|GO:0016020|GO:0016491 | |
| Apr5g1891 | 965 | Pfam | Photosystem II 10 kDa phosphoprotein | 534 | 584 | IPR001056 | GO:0009523|GO:0015979|GO:0016020|GO:0042301|GO:0050821 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Apr5g1891 | Apr-Chr5 | 21981056 | 21986633 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Apr5g1891 | K02704 | - | csin:114319249 | 1885.15 |