Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1890 ATGAATACTGACAGGCAAAGAGATAAAGGGGAAACAACAAACATGGATTCCAGTGGCAATTCTCTACCATCTGCACCTGATGGGGTCAAGAGAAAGGTGTGCTATTTCTATGATCCAGAAGTGGGGAATTACTATTATGGGCAAGGTCACCCTATGAAGCCACATCGTATACGGATGACCCATGCTCTTCTTGCTCATTATGGATTGCTTCAGCACATGCAGGTCCACAAGCCATTTCCTGCTCGAGACAGGGACCTTTGCCGTTTTCATGCCGATGATTATGTTGCATTCCTTCGAAGCATAACCCCTGAAACACAGCAGGATCATTTGAGGCAACTCAAACGCTTTAATGTTGGTGAAGATTGTCCTGTCTTTGATGGCCTCTACTCTTTCTGTCAAACTTATGCTGGAGGTTCAGTTGGTGGTGCCGTCAAGTTAAATCATGATCAATGTGATATTGCTGTCAACTGGGCTGGTGGCTTGCATCATGCCAAGAAGTGTGAGGCTTCTGGATTTTGCTATGTTAATGATATAGTCCTTGCAATTTTAGAACTTCTTAAGCAGCACGAGCGTGTTCTATATGTGGACATTGATATCCACCATGGAGATGGTGTGGAGGAGGCTTTCTACACTACTGACAGAGTCATGACTGTTTCTTTTCATAAATTTGGTGATTATTTTCCTGGGACTGGGGATGTACGTGATATTGGATATGGAAAAGGAAAATACTACTCTCTTAATGTTCCACTTGATGATGGCATTGATGATGAGAGTTATCATTTCTTGTTCAAACCAATAATTGGCAAAGTAATGGAAGTGTTTCGGCCTGGTGCTGTAGTTCTCCAGTGCGGTGCAGATTCTTTATCGGGAGACCGATTGGGATGTTTCAATCTTTCAATTAGGGGTCATGCAGAGTGTGTCAGATATATGAGATCGTTCAATGTGCCCCTTTTGCTACTAGGTGGTGGTGGCTACACCATTCGAAATGTTGCTCGTTGTTGGTGCTATGAGACAGGAGTTGCTCTTGGAATAGAAGTTGATGACAAAATGCCACAGCATGAATATTATGAATATTTTGGTCCAGATTATACCCTTCATGTTGCCCCAAGTAACATGGAAAACAAGAATTCCCGTCATTTACTTGAAGAAATTAGATCTAAGCTACTTGAGAATCTTTCTAAGCTGCAGCATGCTCCCAGTGTCCAATTTCAGGAAAGACCTCCAGATTCTGATCTTGGTGAGGCAGATGAAGATCATGATGATGGAGATGAGCGATGGGATCCAGATTCTGACATGGACATTAATATTGAACGTGAGCTTCCCCCAAGCAAAGTAAAGAAGGAAATTGTTGAACCTCAGATCAATGATTTGGAGGACCAGAGAAGAACTGGGGAGCATTTGAGGGGCTCGGATACTGCAGTTGCTGAAACTTGCATGAAGGCTCTAGATATTTGTTCTCAGCAAGTTGATGAAGATAATGTGAAAGTTGAACAGAATACTATGAATGATTTGGCCAAAGACGGATCTGAAGTGTTAAACAAATAG 1545 0.4239 MNTDRQRDKGETTNMDSSGNSLPSAPDGVKRKVCYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVHKPFPARDRDLCRFHADDYVAFLRSITPETQQDHLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHDQCDIAVNWAGGLHHAKKCEASGFCYVNDIVLAILELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDVRDIGYGKGKYYSLNVPLDDGIDDESYHFLFKPIIGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYETGVALGIEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNSRHLLEEIRSKLLENLSKLQHAPSVQFQERPPDSDLGEADEDHDDGDERWDPDSDMDINIERELPPSKVKKEIVEPQINDLEDQRRTGEHLRGSDTAVAETCMKALDICSQQVDEDNVKVEQNTMNDLAKDGSEVLNK* 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1890 514 MobiDBLite consensus disorder prediction 1 25 - -
Apr5g1890 514 PANTHER HISTONE DEACETYLASE 19 17 505 - -
Apr5g1890 514 SUPERFAMILY Arginase/deacetylase 31 395 IPR023696 -
Apr5g1890 514 MobiDBLite consensus disorder prediction 397 435 - -
Apr5g1890 514 MobiDBLite consensus disorder prediction 414 428 - -
Apr5g1890 514 Pfam Histone deacetylase domain 50 338 IPR023801 -
Apr5g1890 514 Gene3D Histone deacetylase domain 29 402 IPR037138 -
Apr5g1890 514 PRINTS Histone deacetylase superfamily signature 159 182 IPR000286 -
Apr5g1890 514 PRINTS Histone deacetylase superfamily signature 191 206 IPR000286 -
Apr5g1890 514 PRINTS Histone deacetylase superfamily signature 276 286 IPR000286 -
Apr5g1890 514 PRINTS Histone deacetylase signature 52 69 IPR003084 GO:0004407|GO:0016575
Apr5g1890 514 PRINTS Histone deacetylase signature 85 103 IPR003084 GO:0004407|GO:0016575
Apr5g1890 514 PRINTS Histone deacetylase signature 116 133 IPR003084 GO:0004407|GO:0016575
Apr5g1890 514 PRINTS Histone deacetylase signature 137 157 IPR003084 GO:0004407|GO:0016575
Apr5g1890 514 PRINTS Histone deacetylase signature 178 194 IPR003084 GO:0004407|GO:0016575
Apr5g1890 514 PRINTS Histone deacetylase signature 237 250 IPR003084 GO:0004407|GO:0016575
Apr5g1890 514 PRINTS Histone deacetylase signature 254 272 IPR003084 GO:0004407|GO:0016575
Apr5g1890 514 PANTHER HISTONE DEACETYLASE 17 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1890 Apr-Chr5 21928267 21937688 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1890 K06067 - gmx:100795375 973.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1890 5 21928267 21937688 Apr5g1890 5 21928267 21937688 ECH