Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1887 ATGGAGACTTATCCTGGAATATCTCCACGCCCACTGCTACTTATGTTCTTCTTTTCGGTTTTGTGTTATGGTGTAAATTCTTCGACAACCAAAGGATCTTGGCCCCTCCACGATTGCGACCAATGTCATCGTGCCAAGGAACAGGATATCTCTACAACTAGAAACCGCCATCGTCCCGATGAAAAGGATATTGATATAATTGCAACATACAGTGATGCATCTGGCTATGTTCGACTGGCTAGGTTAAAGATGAGGGACTTATCTGATTCCTGGATTTGGGAAAACCCTAATAACGGAAACAATGAATATCAAAAGAGCTCCCAGGAACTGATGGAATCATTTCAAATGGATTCAAGATTTTTGGACAATCCCAAGCATTCCTCAGATGAACATTATCCTCACAAAAGCAGAATTGAAACACCCCGTTCCTCATCAATGACTCCAGTGAAGATCAAGCGCAGGGTAATGCGGCAAGAAAGAAAGCAAGCACGTGGAGCTGAACTTATTCTGCAAGACACAGAAACTGACAATCACTTTGTATCAGCAGCAATGGAACACTCTGAAGGATTTGATACGACTATCAAGGGAAAGTATAGTATATGGAGGAGAGAATATGAAAACCCAAATTCTGATTCAACTCTGAAACTCATGCGAGATCAAATAATAATGGCCAAAGCATATACCAACATTGCAAAATCTATGAACAAAACTATTCTTTACAAAGCTCTTGTCAAACACTCTAGAAATAGTCAACAAGCTATAGGAGAAGCCAGTTCTGATGCTGAGCTTCACCATGGGGCACTTGATCAAGCAAAAGCTATGGGCCATGTTCTTTCTATAGCAAAGGACCAACTTTATGACTGCCTTTTGGTGGCAAGGAAGTTAAGGGTGATGCTTCAATCAACAGAAGATAGAGTGAATATACAGAAGAAAAGAAGTGCATTTTTGATTCAGCTGGCTGCAAAAACTGTGCCTAGACCATTGCACTGCCTTCCTCTGCAACTTGCCGCTGATTATTACCTGCAGAGCTATCATAAGAAAGAAAATCTTGACAAAGAAAAGATTGAAGATCCATCTCTTTACCACTATGCTATATTTTCTGATAATGTACTGGCTACATCTGTGGTCGTTAATTCTACTGTGCAGAATGCAAAGGAACCCAAGAAGCATGTATTCCATATAGTGACGGATAAATTGAATTTTGCAGCAATGAGAATGTGGTTTCTAATCAACCCTCCTTCTAAAGCAACCATTGAAGTTCAGAATATTGATGACTTCAAGTGGCTGAATTCCTCTTATTGTTCTGTTCTACGTCAACTAGAATCAGCAAGAATCAAGGAATATTACTTTAAAGCCAATCATCCTTCCTCCCTCTCTGTTGGTTCTGACAATCTAAAATATAGAAATCCTAAATATTTGTCAATGCTAAATCACTTAAGGTTCTACCTTCCTGAAGTTTATCCAAAATTAAACAGAATTTTGTTCTTGGATGATGACATTGTAGTGCAGAAAGATTTGACACCTCTTTGGTCAATTGATTTGAAAGGTATGGTGAATGGTGCTGTAGAGACATGCAAGGAGAGCTTCCATAGGTTTGATAAATACCTAAACTTTAGTAATCCACTGATTTCCAACAATTTCAGTCCTGAGGCTTGTGGCTGGGCATTTGGCATGAATATTTTTGACTTGAAGGAGTGGAAGAAACGAAACATCACTGGAATATATCATCGGTGGCAAGATATGAACGAGGATAGAACCCTCTGGAAGCTTGGAACCTTACCCCCTGGACTAATCACCTTTTATAATCTGACCTATCCGCTGGATCGAGGCTGGCACGTTTTGGGACTTGGCTATGACCCGGCTCTGAACCTAACAGAAATAGAGAGTGCCGCTGTCATTCACTACAACGGAAACTACAAGCCGTGGTTGAATCTTGCTGTTTCGAAATATAAATCATACTGGTCCCGATATGTTATGTTCGATAATCCATATCTTCGAGTTTGCAACCTTAGCGAATAG 2019 0.4007 METYPGISPRPLLLMFFFSVLCYGVNSSTTKGSWPLHDCDQCHRAKEQDISTTRNRHRPDEKDIDIIATYSDASGYVRLARLKMRDLSDSWIWENPNNGNNEYQKSSQELMESFQMDSRFLDNPKHSSDEHYPHKSRIETPRSSSMTPVKIKRRVMRQERKQARGAELILQDTETDNHFVSAAMEHSEGFDTTIKGKYSIWRREYENPNSDSTLKLMRDQIIMAKAYTNIAKSMNKTILYKALVKHSRNSQQAIGEASSDAELHHGALDQAKAMGHVLSIAKDQLYDCLLVARKLRVMLQSTEDRVNIQKKRSAFLIQLAAKTVPRPLHCLPLQLAADYYLQSYHKKENLDKEKIEDPSLYHYAIFSDNVLATSVVVNSTVQNAKEPKKHVFHIVTDKLNFAAMRMWFLINPPSKATIEVQNIDDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSVGSDNLKYRNPKYLSMLNHLRFYLPEVYPKLNRILFLDDDIVVQKDLTPLWSIDLKGMVNGAVETCKESFHRFDKYLNFSNPLISNNFSPEACGWAFGMNIFDLKEWKKRNITGIYHRWQDMNEDRTLWKLGTLPPGLITFYNLTYPLDRGWHVLGLGYDPALNLTEIESAAVIHYNGNYKPWLNLAVSKYKSYWSRYVMFDNPYLRVCNLSE* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1887 672 SUPERFAMILY Nucleotide-diphospho-sugar transferases 361 664 IPR029044 -
Apr5g1887 672 CDD GT8_like_1 361 658 - -
Apr5g1887 672 MobiDBLite consensus disorder prediction 124 138 - -
Apr5g1887 672 Pfam Glycosyl transferase family 8 330 645 IPR002495 GO:0016757
Apr5g1887 672 MobiDBLite consensus disorder prediction 124 148 - -
Apr5g1887 672 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 363 662 IPR029044 -
Apr5g1887 672 PANTHER GALACTURONOSYLTRANSFERASE 3-RELATED 39 671 - -
Apr5g1887 672 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 39 671 IPR029993 GO:0047262
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1887 Apr-Chr5 21895009 21899138 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1887 59 672 Glycosyltransferase AT4G38270 67.955 0.0 884
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1887 K13648 - gmx:100781749 1174.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr5g1887 5 21895009 21899138 Apr5g1887 5 21895009 21899138 ECH