Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1880 ATGGAAAGGAAGATGAGTTGGAGATGGGCAGCGGTGGCAGGGGTGTTGGTGTGGTTTACAGTAGGAAGCAGGGGAGAGCAGTGTGGAAGCCAGGCAGGGGGTGCTCTGTGCCCAGGTGGGTTGTGTTGCAGCAAATTCGGGTGGTGTGGAACAACCCCTGACTACTGCGGCGATGGTTGCCAAAGTCAGTGCAGCGGAAGCAGTGAAGGTGGCGACCTCGCTGCCCTCATCTCCAGAGACACCTTCAACCAGATGCTCATACATAGAGATGATGGTGCATGCCCAGCAAGAGGATTTTACACCTACGATGCTTTCATCGCTGCTGCTAAGGCTTTCCCCAACTTCGCCAACGACGGAGACACTGCCACTCGCAAAAGAGAGATCGCTGCTTTCTTCGGCCAAACATCCCACGAAACTACTGGAGGATGGCCCACTGCTCCCGATGGGCCCTACGCATGGGGTTACTGCTTTGTTAGAGAACAGAACCCCAGCGACTACTGTTCCCCCAGCTCCCAATTCCCCTGTGCTCCTGGCAGGCAATACTACGGTCGGGGTCCCATTCAACTATCATGGAACTACAACTACGGACAATGTGGAAATGCAATAGGCGTGGACTTGCTGAACAATCCTGACCTGGTCGCCACAGATCCAGTCATCTCGTTCAAGACAGCCATCTGGTTCTGGATGACGCCACAATCGCCAAAGCCATCCTGCCACGACGTCATCACCGGACGATGGAACCCCTCCGATGCTGATCGTGCGGCTGGGAGACTTCCTGGGTACGGTACTGTCACCAACATCATCAATGGTGGCCTTGAATGCGGCCATGGCCAAGATAGCAGGGTGCAAGACCGCATCGGATTTTACCAGAGATACTGTAACTTACTTGGCGTTGACTATGGCAGTAACCTTGACTGTTCTTCACAGAGGCCATTTGCATCTTCTCTGCTGCTTCTCGACTCCATCTGA 969 0.5428 MERKMSWRWAAVAGVLVWFTVGSRGEQCGSQAGGALCPGGLCCSKFGWCGTTPDYCGDGCQSQCSGSSEGGDLAALISRDTFNQMLIHRDDGACPARGFYTYDAFIAAAKAFPNFANDGDTATRKREIAAFFGQTSHETTGGWPTAPDGPYAWGYCFVREQNPSDYCSPSSQFPCAPGRQYYGRGPIQLSWNYNYGQCGNAIGVDLLNNPDLVATDPVISFKTAIWFWMTPQSPKPSCHDVITGRWNPSDADRAAGRLPGYGTVTNIINGGLECGHGQDSRVQDRIGFYQRYCNLLGVDYGSNLDCSSQRPFASSLLLLDSI* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1880 322 ProSiteProfiles Chitin-binding type-1 domain profile. 25 66 IPR001002 GO:0008061
Apr5g1880 322 CDD chitinase_GH19 77 306 - -
Apr5g1880 322 PRINTS Chitin-binding domain signature 35 43 IPR001002 GO:0008061
Apr5g1880 322 PRINTS Chitin-binding domain signature 43 50 IPR001002 GO:0008061
Apr5g1880 322 PRINTS Chitin-binding domain signature 50 57 IPR001002 GO:0008061
Apr5g1880 322 ProSitePatterns Chitinases family 19 signature 1. 94 116 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr5g1880 322 Gene3D - 76 307 - -
Apr5g1880 322 Gene3D Endochitinase, domain 2 159 215 - -
Apr5g1880 322 Gene3D - 25 67 IPR036861 GO:0008061
Apr5g1880 322 CDD ChtBD1_GH19_hevein 26 65 - -
Apr5g1880 322 Pfam Chitin recognition protein 27 64 IPR001002 GO:0008061
Apr5g1880 322 SMART ChitinBD_3 27 64 IPR001002 GO:0008061
Apr5g1880 322 PANTHER BASIC ENDOCHITINASE B 17 316 - -
Apr5g1880 322 PANTHER CHITINASE-RELATED 17 316 - -
Apr5g1880 322 ProSitePatterns Chitin recognition or binding domain signature. 37 56 IPR018371 GO:0008061
Apr5g1880 322 PIRSF Endochitinase 2 313 IPR016283 GO:0004568|GO:0005975
Apr5g1880 322 Pfam Chitinase class I 76 306 IPR000726 GO:0004568|GO:0006032|GO:0016998
Apr5g1880 322 SUPERFAMILY Lysozyme-like 73 312 IPR023346 -
Apr5g1880 322 SUPERFAMILY Plant lectins/antimicrobial peptides 27 66 IPR036861 GO:0008061
Apr5g1880 322 ProSitePatterns Chitinases family 19 signature 2. 219 229 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1880 Apr-Chr5 21846607 21847986 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr5g1880 26 317 Glycoside Hydrolase AT3G12500 72.819 1.72e-160 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1880 K20547 - egr:104419011 509.605