Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1879 ATGGAAGGCCTGGCGGTTCCAGTTGCACAACTGTTACCGCTTCCTAAAGTTGGCATTCCCACAACACCTAATGCAGTTACGGGATTTGTCTCTCTGAATCTCAAACAACACCTTGGACGCGGCGTTTCTTTTCGCACATCATCGCATGCACACTCACAGGCTGAGGCTGTTCCCCTTTCTGAACATGAACAAGAACTAGATAATCCCAATCCTAATCCTGATTGTGTGAGCGGGGATTCCATACGGCAGAGATTTCTCAATTTTTACGCTTGCCGTGGTCACAAGGTCCTTCCCAGTGCTTCTCTGGTCCCCGATGATCCCACTGTTCTACTCACTATCGCAGGGATGCTTCAGTTCAAGCCTATCTTCCTAGGCAAGGTTCCAAGACAAGTACCTTGTGCCACTACTGCGCAAAGGTGCATACGTACTAATGATATCCACAACGTTGGCCTCACTGCCAGACATCATACCTTCTTTGAAATGCTTGGAAACTTCAGCTTTGGTGATTACTTCAAAAAACAAGCTATTCTATGGGCTTGGGAGCTTTCCACCGTTGAATTTCGTTTGCCCCCAAACAGATTATGGGTTAGTGTTTATCAAGATGATGACGAGGCTTTTCAGCTCTGGTCTCATGAGGTCGGTGTTCCAGTGGAGCGTATAAAGAGGTTGGGAGAAGAGGACAACTTCTGGTCCAGTGGAGTGACAGGCCCCTGTGGTCCTTGCTCAGAAATTTATTATGATTTTCATCCTGAGAGGGGACATGTAGATGCCCAGGATCTCAATGATGATACAAGGTTTATAGAGTTCTACAACCTAGTATTTATGCAATACAACAAAAAAGACGATGGTTCTCTTGAACCTCTAAAGCAGAAGAACATAGATACTGGCCTTGGACTGGAGCGTATGGCTCGCATTCTTCAAAATGTTCCAAACAACTATGAAACTGACTTAATCTTCCCCATTATAGAGATGGCCTCTAAATTAACAAATGTTTCATATGGCACTGCTGATGATCAGACAAAGAGGAATCTAAAAATTATAGGAGACCACATGCGTGCAATTGTATTTCTCATCTCTGATGGAGTTGTTCCATCAAATGTTGGGAGAGGTTATGTAGTTCGGCGTCTTATTAGAAGGGTTGTTCGTACAGGCAGGTTGCTTGGTATAAAAGGTGATGGCAGGGGAGACCTTGAAGGAGCTTTCTTGCCAATTATTGCTGAGAAGGTAGTTGAATTAAGTAGGCAAATTGATGCTGATTTGAAGAACAGAGCACCACGTATCCTTGAGGAGTTGAAGAGAGAAGAGCTTCGGTTTGTGCAGACACTTGAGAGAGGTGAAAAGTTGCTTGAGGAGAAACTTGCTGATGCTTTATCAAGTGCAGAAAGAAATGGAACTGTGCCTTGCTTGGCTGGTGAAGATGTGTTTCTTTTGTATGATACTTATGGGTATCCAATGGAAATAACAAAAGAAGTGGCTGAAGAATGTGGTGTGAATATTGATATGAGTGGTTTTGATATTGAGATGGAGAAGCAAAGGCGTCAATCTCAAGCTGCACACAATACTGTCAAACTTACCATTGGAAATGGGGAAAATATTGCAGAAGATGTACCTGATACTGAATTTATTGGATATGACAGTCTTTATTGTAAAGCCATGATAGAAAGCCTAATGGTAAATGGTGATCCAGTTGTACGGGTTGGTGAAGGGAGTAATGTGGAAGTTTTACTAAACAAAACTCCATTTTATGCTGAATCAGGGGGACAAATTGGAGATCATGGTTTTCTATATATTTCAGAGGGTGAGAATCAACCAAAAGCTGTTGTTGAGATAATAGATGTTCAGAAGTCTTTGGGTAACGTATTTGTTCACAAGGGTACAGTTCAAAAGGGTGTTGTAGAGGTTGGCAAAGAAGTAGAAGCCACAGTGGATGTAAAGCTGAGGCAGCGAGCTAAGGTTCATCATACTGCTACTCATTTACTACAAGCTGCACTGAAGAAAGTTATTGGTCAGGAGACCTCACAAGCTGGTTCATTGGTGGCATTTGATCGTCTCAGGTTTGATTTCAACTTTCACCGACCACTTCTTGACAGTGAGCTTGCAGAAATTGAGGTGATAATCAATGGATGGATTGAGGATTCTACGCTGCTTCAAACCAAAGTGATGCCTCTTGCTGATGCAAAAAGAGCTGGAGCTATTGCAATGTTTGGAGAAAAATATGGAGAAGAGGTACGTGTTGTAGAGGTTCCTGGTGTATCGATGGAACTTTGTGGTGGGACTCATGTCAGTAGCACTTCTGAAATTCGTGGTTTTAAAATAATCTCAGAGCAGGGCATTGCGTCTGGAATCAGGCGTATTGAAGCTGTAGCTGGGGAAGCTTTCATTGAATATGTCAATGCCCGAGACTTTTATCTGAGGCAGCTATGTTCCACTCTCAAAGTTAAACCTGAAGAAGTGACAACAAGGATAGAAAACCTTTTAGAGGAGTTACGGGTAGCTAGAAACGAAAATTCTGCTGTTCGTGCAAAAGCAGCAGTCTACAAAGCTTCAGTCATTGCAAGCAAAGCATTGTTGGTGGGGAATTCAAAACAGTACAGGGTACTGGTTGAGTGCTTGGATGATGTTGATGCAGAGTCACTTAAAAGTGCTGCAGAATATTTAATTGAAACACTAGGAGATCCAGCAGCGGTTGTACTGGGCTCGTGTCCAGGTGCAGGGAAGGTTAGTCTAGTAGCTGCTTTTACTCCTGGGGTTGTTGATCTGGGGATTCAGGCAGGTAAGTTTATTGGACAAATAGCAAAACTATGTGGTGGTGGAGGAGGTGGAAGGCCCAATTTTGCTCAGGCTGGTGGGAGGAAGGCTGAAAATTTGGCAAGTGCCCTCGACAAGGCTCGGTCAGAGCTTTTAGCTACTCTATGTGAAAAAGGGAACTGA 2931 0.4336 MEGLAVPVAQLLPLPKVGIPTTPNAVTGFVSLNLKQHLGRGVSFRTSSHAHSQAEAVPLSEHEQELDNPNPNPDCVSGDSIRQRFLNFYACRGHKVLPSASLVPDDPTVLLTIAGMLQFKPIFLGKVPRQVPCATTAQRCIRTNDIHNVGLTARHHTFFEMLGNFSFGDYFKKQAILWAWELSTVEFRLPPNRLWVSVYQDDDEAFQLWSHEVGVPVERIKRLGEEDNFWSSGVTGPCGPCSEIYYDFHPERGHVDAQDLNDDTRFIEFYNLVFMQYNKKDDGSLEPLKQKNIDTGLGLERMARILQNVPNNYETDLIFPIIEMASKLTNVSYGTADDQTKRNLKIIGDHMRAIVFLISDGVVPSNVGRGYVVRRLIRRVVRTGRLLGIKGDGRGDLEGAFLPIIAEKVVELSRQIDADLKNRAPRILEELKREELRFVQTLERGEKLLEEKLADALSSAERNGTVPCLAGEDVFLLYDTYGYPMEITKEVAEECGVNIDMSGFDIEMEKQRRQSQAAHNTVKLTIGNGENIAEDVPDTEFIGYDSLYCKAMIESLMVNGDPVVRVGEGSNVEVLLNKTPFYAESGGQIGDHGFLYISEGENQPKAVVEIIDVQKSLGNVFVHKGTVQKGVVEVGKEVEATVDVKLRQRAKVHHTATHLLQAALKKVIGQETSQAGSLVAFDRLRFDFNFHRPLLDSELAEIEVIINGWIEDSTLLQTKVMPLADAKRAGAIAMFGEKYGEEVRVVEVPGVSMELCGGTHVSSTSEIRGFKIISEQGIASGIRRIEAVAGEAFIEYVNARDFYLRQLCSTLKVKPEEVTTRIENLLEELRVARNENSAVRAKAAVYKASVIASKALLVGNSKQYRVLVECLDDVDAESLKSAAEYLIETLGDPAAVVLGSCPGAGKVSLVAAFTPGVVDLGIQAGKFIGQIAKLCGGGGGGRPNFAQAGGRKAENLASALDKARSELLATLCEKGN* 977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1879 976 SUPERFAMILY Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 314 523 IPR018162 GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419
Apr5g1879 976 Pfam Threonyl and Alanyl tRNA synthetase second additional domain 743 786 IPR012947 GO:0004812|GO:0005524|GO:0043039
Apr5g1879 976 Pfam tRNA synthetases class II (A) 81 644 IPR018164 GO:0000166|GO:0004813|GO:0005524|GO:0006419
Apr5g1879 976 Gene3D - 790 851 - -
Apr5g1879 976 Pfam DHHA1 domain 823 965 IPR003156 GO:0003676
Apr5g1879 976 MobiDBLite consensus disorder prediction 45 72 - -
Apr5g1879 976 Gene3D - 653 788 - -
Apr5g1879 976 Hamap Probable alanine--tRNA ligase, chloroplastic. 68 973 IPR027522 GO:0009507
Apr5g1879 976 Gene3D - 714 767 - -
Apr5g1879 976 SMART tRNA_SAD_4 743 786 IPR012947 GO:0004812|GO:0005524|GO:0043039
Apr5g1879 976 PANTHER ALANINE--TRNA LIGASE, MITOCHONDRIAL 77 966 - -
Apr5g1879 976 SUPERFAMILY Translation proteins 537 642 IPR009000 -
Apr5g1879 976 TIGRFAM alaS: alanine--tRNA ligase 81 950 IPR002318 GO:0000166|GO:0005737
Apr5g1879 976 ProSiteProfiles Alanyl-transfer RNA synthetases family profile. 76 799 IPR018165 GO:0003676|GO:0004813|GO:0005524|GO:0006419
Apr5g1879 976 SUPERFAMILY Class II aaRS and biotin synthetases 78 313 IPR045864 -
Apr5g1879 976 Gene3D - 859 967 - -
Apr5g1879 976 PANTHER ALANYL-TRNA SYNTHETASE 77 966 - -
Apr5g1879 976 CDD AlaRS_core 79 309 - -
Apr5g1879 976 SUPERFAMILY ThrRS/AlaRS common domain 642 801 IPR018163 GO:0000166
Apr5g1879 976 Coils Coil 822 842 - -
Apr5g1879 976 Gene3D Bira Bifunctional Protein; Domain 2 76 310 IPR045864 -
Apr5g1879 976 PRINTS Alanyl-tRNA synthetase signature 144 155 IPR002318 GO:0000166|GO:0005737
Apr5g1879 976 PRINTS Alanyl-tRNA synthetase signature 267 278 IPR002318 GO:0000166|GO:0005737
Apr5g1879 976 PRINTS Alanyl-tRNA synthetase signature 294 307 IPR002318 GO:0000166|GO:0005737
Apr5g1879 976 PRINTS Alanyl-tRNA synthetase signature 345 361 IPR002318 GO:0000166|GO:0005737
Apr5g1879 976 PRINTS Alanyl-tRNA synthetase signature 369 382 IPR002318 GO:0000166|GO:0005737
Apr5g1879 976 Hamap Alanine--tRNA ligase [alaS]. 77 971 IPR023033 GO:0004813
Apr5g1879 976 Gene3D - 529 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1879 Apr-Chr5 21838052 21844081 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1879 K01872 - gmx:100817906 1620.14