Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1874 ATGTCGTGTTTGTTGCCGCACTTCAATTGCCACCCCGACACTTTCAGAACTCATCCCTATGCTCTTCCATCAAAAACAAGACCAATTTTGTGTTTCCAGCCGCAATGTGTTTTGTCTCCCGCATCTCCGTCAACGCTGCTTCATTTGGAAAATAAGTTGGCATTAGATGCTCCTTCTGATCCAAACCCGCCCTGGCCCTATATCGCTCCTGTTCCTCCCTCCACACAGGCAAACTTTAAAGCAACCTTATCTACGGAATCACTTCTTACTAGTGAAGAGGCTGTAGTAGCTGCTGCTGCATCTGAAGCTCTTGCTCTTGCTAAAGCAGCTGTGAAGGTTGCAAAGGATGCAGCTTTGCTAGTGAGAAAGAAGCCCCCAGCAGAAGCAGAGTATAGATCACATGTTTCTTTCAAATCTGATGATTTACTTCTCAAATGGGTTCAACATCTGGAAGCAGAAGATGCTGTGGAAGGAGGATCCATGGGTACTGGAGCAGAAATCATGGAAGATGTTGACATAAGCCCCAGCCAAGAGGAATCTGATGATGTAGAGCCTTCTCATGAGGAACTTGAGCATCTGCAGGAACTGCTTTCCAACAGTATAGCTGTAAGATCTAGGCGCCAAACAGAAAGAAAAGCTAGAAGAGTCAGAGCAGCGGAGAAGGCTACCACAAATATTGTGTCTTTTAAGCCTGGTTCCACCAGCAGGAGAAAGCGTGCTTCTAAGCAAGAAGTAGATCATTCAGATCCACTTCGTTACTTAAGAACAACAACTGGCTCTACTAGGCTTCTTACTTCAAGTGAAGAAATTGAGTTGTCTGAAGGAATACAGGACCTTTTAAAGCTTGAAAAGCTTCACAAGGATCTTGCTGAAAGATGTGGTGGTCAGCCTACATTTGCACAATGGGCTGCTGTGGCAGGGGTAGATCAGAAGACCCTGAGGAGACGACTAAATTATGGTATATTTTGCAAAGACAAGATGATTAAAAGCAATATACGGCTTGTCATATCAATTGCTAAGAATTATCAAGGATCCGGAATGAATCTGCAAGATCTTGTCCAGGAAGGATGCCGAGGCCTCGTAAAAGGTGCAGAGAAGTTTGACGGTACTAAGGGTTTTAAATTCTCCACCTATGCTCATTGGTGGATTAAACAGGCAGTTCGGAAATCACTTTCTGATCAGTCAAGAACTATTCGCTTGCCATTCCACATGGTGGAGGCAACATACAGAGTGAAGGAGGCCAGAAAACAATTGTATAGTGAAAATGGAAGACACCCTGATGATGAAGAAGTTGCTGAAGCAACTGGATTGTCAATGAAGAGGCTTAATGCTGTACTTTTGACCCCAAAAGCTCCCAGATCTCTGGAACAGAAGATTGGGATCAACCAGAATCTTAAACCTTCAGAAGTAATTGCTGATCCTGAGGCCGAAACAGTTGAAGAACAGTTGATTAAGGAATTTATGAAGAAGGACCTGGAAGAGGCACTGGACAGTCTCAATCCAAGAGAGAAGCAGGTGGTAAGATGGAGATTTGGTATGGATGATGGAAGAATGAAGACCCTGCAAGAGATAGGGGAGATGATGGGAGTGAGTAGGGAGAGAGTGAGGCAAATTGAATCTTGTGCTTTTAAGAAGCTTAAGAACAAGAAGAGAACCAAGCATTTTCAGCAATATTTGGTTTCATAA 1686 0.4377 MSCLLPHFNCHPDTFRTHPYALPSKTRPILCFQPQCVLSPASPSTLLHLENKLALDAPSDPNPPWPYIAPVPPSTQANFKATLSTESLLTSEEAVVAAAASEALALAKAAVKVAKDAALLVRKKPPAEAEYRSHVSFKSDDLLLKWVQHLEAEDAVEGGSMGTGAEIMEDVDISPSQEESDDVEPSHEELEHLQELLSNSIAVRSRRQTERKARRVRAAEKATTNIVSFKPGSTSRRKRASKQEVDHSDPLRYLRTTTGSTRLLTSSEEIELSEGIQDLLKLEKLHKDLAERCGGQPTFAQWAAVAGVDQKTLRRRLNYGIFCKDKMIKSNIRLVISIAKNYQGSGMNLQDLVQEGCRGLVKGAEKFDGTKGFKFSTYAHWWIKQAVRKSLSDQSRTIRLPFHMVEATYRVKEARKQLYSENGRHPDDEEVAEATGLSMKRLNAVLLTPKAPRSLEQKIGINQNLKPSEVIADPEAETVEEQLIKEFMKKDLEEALDSLNPREKQVVRWRFGMDDGRMKTLQEIGEMMGVSRERVRQIESCAFKKLKNKKRTKHFQQYLVS* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1874 561 CDD Sigma70_r4 489 540 - -
Apr5g1874 561 PANTHER RNA POLYMERASE SIGMA FACTOR SIGB 27 560 - -
Apr5g1874 561 Gene3D RNA Polymerase Primary Sigma Factor 143 399 - -
Apr5g1874 561 Pfam Sigma-70 region 3 406 482 IPR007624 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 Pfam Sigma-70 region 2 327 396 IPR007627 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 Gene3D - 400 477 IPR036388 -
Apr5g1874 561 PRINTS Major sigma-70 factor signature 351 364 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 PRINTS Major sigma-70 factor signature 375 383 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 PRINTS Major sigma-70 factor signature 499 511 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 PRINTS Major sigma-70 factor signature 520 535 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 PRINTS Major sigma-70 factor signature 535 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 ProSitePatterns Sigma-70 factors family signature 2. 520 546 IPR000943 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 395 446 IPR013324 -
Apr5g1874 561 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 27 560 - -
Apr5g1874 561 Pfam Sigma-70, region 4 495 547 IPR007630 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 TIGRFAM sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 325 549 IPR014284 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 459 557 IPR013324 -
Apr5g1874 561 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 247 397 IPR013325 GO:0003700|GO:0006352|GO:0006355
Apr5g1874 561 PIRSF Sigma_factor_SigC 71 561 IPR016262 -
Apr5g1874 561 Gene3D - 481 561 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1874 Apr-Chr5 21803306 21807922 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1874 - - aprc:113864822 993.416