Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1873 ATGAAGAAGAGGAGCGAGGTGGAGCCCCAGCAACCTTCTTCTTCTGTTGTTGAGTTGCAGAAAGAGAAAGAAAAATGGAAAGGGGACCAAACCCTCGTGTCTTCCAATCCCAATCCCAAGTTTGATGATGGCTTCTACGAAATCGAAACCATACGCCGTAAGAGGGTGCGCAAGGGTCAGCTACAATACCTAATCAAATGGCGTGAATGGCCGGAGACTGCCAATACTTGGGAGCCTCTTGAAAATCTGCAGTCAGTTCCTGATCTAATTGATGCTTTTGAAGACAGCCTCAAGTCGGGAAAACAGCGTAAGCGCAAACGCAAGTATGTCGTTCACCATGTCCAACCCAAGAAGCGACTCCAACGTTCTACCACTTCTTACAGCCTTAGACACTTTCCAACTGAAAACCATATTCCTGCCCATCCTCAAACTCACATTGCTACTGACATAGGACAGACTAATGCTAATCCCACTGCCCCTTCGCAACCCGAACATGCTAATGTAAATGGGTTTGCAAAACACGAGGACAATGATTATGATCCAAAGCTCAGTGAACTTAAAGCTACAATGAACAATGGGGTTGATATTGATAAGCTCGCAATACATTTCCAACAACCTAAGGTTTCAACAGTCAACGGTCATGTGGATGGTCAATCGAAGGTGGATTGTGTGGAACCAGTTCAAAATGGGCGCTGCAGAGGAGCAAAAAGGAGAAAATCTGGTTCTGTGAAGAGGTTCAAGAAAGAGACATATGCATGCGAGCCTGTTGATGCACAGAATGCAATCGGCATATCTGTTGGTACAGGTGAACCAGGTTGCAGAGGTATTGCTGGTTATATGCAAAATAATAGTCACACGAACATGGGCAATGCTACAACTGCCTGCAATATTGTCAAGATTATAAAGCCAATAGGCTATTCAGCTTCTTTATCTGACAACATACATGATGTTTCAGTGACCTTTATGGCTATGAGGTCTGATGGAACGGAAGTGATGGTGGATAACAAATATCTCAAGGCATATGATCCACTTCTGCTGATCAATTTCTATGAGCTGCATCTCCGGTATAGTCCTATATCGTGA 1083 0.4423 MKKRSEVEPQQPSSSVVELQKEKEKWKGDQTLVSSNPNPKFDDGFYEIETIRRKRVRKGQLQYLIKWREWPETANTWEPLENLQSVPDLIDAFEDSLKSGKQRKRKRKYVVHHVQPKKRLQRSTTSYSLRHFPTENHIPAHPQTHIATDIGQTNANPTAPSQPEHANVNGFAKHEDNDYDPKLSELKATMNNGVDIDKLAIHFQQPKVSTVNGHVDGQSKVDCVEPVQNGRCRGAKRRKSGSVKRFKKETYACEPVDAQNAIGISVGTGEPGCRGIAGYMQNNSHTNMGNATTACNIVKIIKPIGYSASLSDNIHDVSVTFMAMRSDGTEVMVDNKYLKAYDPLLLINFYELHLRYSPIS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1873 360 MobiDBLite consensus disorder prediction 101 119 - -
Apr5g1873 360 ProSiteProfiles Chromo and chromo shadow domain profile. 46 105 IPR000953 -
Apr5g1873 360 MobiDBLite consensus disorder prediction 99 123 - -
Apr5g1873 360 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 18 358 IPR044251 GO:0006325|GO:0031507
Apr5g1873 360 SMART chromo_7 45 98 IPR000953 -
Apr5g1873 360 SMART ChS_2 286 359 IPR008251 GO:0005634
Apr5g1873 360 MobiDBLite consensus disorder prediction 1 39 - -
Apr5g1873 360 Gene3D - 39 112 - -
Apr5g1873 360 SUPERFAMILY Chromo domain-like 37 103 IPR016197 -
Apr5g1873 360 CDD CD_CSD 46 95 - -
Apr5g1873 360 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 18 358 - -
Apr5g1873 360 Pfam Chromo (CHRromatin Organisation MOdifier) domain 46 95 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1873 Apr-Chr5 21789942 21795318 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1873 - - vun:114164029 433.335