Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1872 ATGGAAGGCGAAGAAAGGGAGAAGAAAAGAGGAGTGCGATTGTGCTGCCTATGCAACCAACGAAGAGCTTCCCTCAAGAGACCCAAAACACTACAACACATTTGCAGGGACTGCTTCTACGACGTCTTCGAGGACGAGATTCACCAAGTCATCGTTCAGAATAAGCTGTTTAGTCCTGGAGAGCGCGTCGCAATCGGTGCTTCCGGCGGCAAGGATTCCACGGTGCTGGCTTACGTGTTGTCCAAACTGAACCGCGTACACAATTACGGTCTGCATCTGTTTCTGTTATCAGTGGACGAGGGCATCACCGGGTACCGCGACGACTCTCTGGAAACTGTTCATCGGAACCAAATTCAGTACGGACTGCCTCTGAAAGTGGTGTCTTACAAGGATTTGTATGGATGGACGATGGACGAGATCGTGAAATTGATTGGTTTGAAGAACAACTGCACCTTCTGCGGCGTGTTCCGTCGGCAGGCCCTGGATCGAGGTGCTGCGTTGCTCAAAGTAGATAAAGTGGTTACCGGTCACAATGCAGACGATATTGCAGAGACTGTTCTCCTGAATCTGTTGAGAGGAGACGTTGCTAGATTGAGTAGATGCACCTCTATCACCACTGGTGAGGATGGCCCCATTCCCAGGTGTAAGCCTTTCAAGTATACCTACGAGAAGGAGATCGTTATGTATGCTTATTTCAAGAGGCTCGACTACTTTTCCACCGAATGCATTTATTCTCCGAATGCATACCGAGGTTTTGCTCGCGAGTTCATCAAGGATTTGGAGAGAATCAGGTCGCTATCCAATTCAAATTATTTGATTTTGGTTCTTCACACACAATCACATGTAGTTGTATTGATATGCAGGCCTAGGGCGATTCTTGACATAATAAAATCAGGGGAGAATTTCAGGATATCAACGACAACTAAAATGCCGGAGCAGGGAACGTGTGAACGGTGCGGTTATATTTCTAGCCAGAAATGGTGTAAAGCTTGTGTTCTTCTTGACGGGTTGAATAGAGGTTTGCCCAAACTGGGAATTGGACGGAGTCGTGGCAGTGTTGCTTTTAACAACGCAAATGACAGTGATGGAGCAAAGGCCATCCACACCAAACAATAA 1116 0.4722 MEGEEREKKRGVRLCCLCNQRRASLKRPKTLQHICRDCFYDVFEDEIHQVIVQNKLFSPGERVAIGASGGKDSTVLAYVLSKLNRVHNYGLHLFLLSVDEGITGYRDDSLETVHRNQIQYGLPLKVVSYKDLYGWTMDEIVKLIGLKNNCTFCGVFRRQALDRGAALLKVDKVVTGHNADDIAETVLLNLLRGDVARLSRCTSITTGEDGPIPRCKPFKYTYEKEIVMYAYFKRLDYFSTECIYSPNAYRGFAREFIKDLERIRSLSNSNYLILVLHTQSHVVVLICRPRAILDIIKSGENFRISTTTKMPEQGTCERCGYISSQKWCKACVLLDGLNRGLPKLGIGRSRGSVAFNNANDSDGAKAIHTKQ* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1872 371 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 37 262 - -
Apr5g1872 371 Hamap Cytoplasmic tRNA 2-thiolation protein 1 [CTU1]. 13 349 IPR000541 GO:0000049|GO:0002098|GO:0034227
Apr5g1872 371 PIRSF ATPase_YdaO 12 274 IPR035107 GO:0008033
Apr5g1872 371 PIRSF ATPase_YdaO 287 346 IPR035107 GO:0008033
Apr5g1872 371 CDD Alpha_ANH_like_II 62 248 - -
Apr5g1872 371 Pfam PP-loop family 63 250 IPR011063 -
Apr5g1872 371 Pfam Zinc-ribbon 314 344 IPR032442 -
Apr5g1872 371 Gene3D HUPs 14 358 IPR014729 -
Apr5g1872 371 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 14 267 - -
Apr5g1872 371 PANTHER ATPASES OF THE PP SUPERFAMILY-RELATED 287 362 - -
Apr5g1872 371 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1 287 362 IPR000541 GO:0000049|GO:0002098|GO:0034227
Apr5g1872 371 PANTHER CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 1 14 267 IPR000541 GO:0000049|GO:0002098|GO:0034227
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1872 Apr-Chr5 21788778 21790380 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1872 K14168 - gmx:100816096 631.328