Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr5g1871 ATGTCGTCAATATTGTCTATTTCATCACCAATCTCCCGTTGTTCTTATTCCTCAATTTCGATTTGTCGCTTGCCATGTTCTTTCACTGCACATCCATTTCTGAAATTGCAAGAAAGAAGAGCGAAAGGGAAAGGGACAGTGGTAATGAGCATGGAGGCGGGTATTGGAGTGATGGGCACCAAATTGGGTATGATGAGCTATTTCGAAGCTGACGGAGAGGTTGTTCCCGTCACTGTGGTGGGTTTCAAAGAAGGTAACATCGTCACTCAGATCAAAACTGAGGCCACCGATGGCTACAACGCCGTCCAGGTTGGTTACCGAAGAGTCAGAGACCGCAAATTGACCAAACCCGAAATGGGACATCTCCAGAAGGTCGGCGCCATTCCCATGCGCCATCTTCAGGAGTTCCGTCTTCAAACCATCGATAACTTTGATCTTAACCAACGCCTTCTTTTGGATGAAATTTTCAAGGAGGGTGATCTTGTGGATGTCTCTGGCACCACCATTGGCAAGGGTTTCCAAGGTGGAATAAAGCGTCATAACTTCAAAAGGGGTCAAATGAGCCATGGTTCAAAGAGTCATAGACAATTAGGATCAATTGGTGCTGGAACCACACCTGGGCGTGTATACAAGGGAAAGAAGATGCCTGGTAGGATGGGAGGAACAAAGAGGAAGATAAGAAAGCTTAAGATTGTCAAAATCGATAAAGATCTTAATGTTGTAATGATCAAAGGTGCTGTCCCTGGTAAGCCAGGGAATCTTCTTCGGATAACTCCAGCCAAGATTGTAGGCAAAAACATTCCAAAGAATTAG 813 0.4514 MSSILSISSPISRCSYSSISICRLPCSFTAHPFLKLQERRAKGKGTVVMSMEAGIGVMGTKLGMMSYFEADGEVVPVTVVGFKEGNIVTQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLQKVGAIPMRHLQEFRLQTIDNFDLNQRLLLDEIFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMSHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKRKIRKLKIVKIDKDLNVVMIKGAVPGKPGNLLRITPAKIVGKNIPKN* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr5g1871 270 Pfam Ribosomal protein L3 147 236 IPR000597 GO:0003735|GO:0005840|GO:0006412
Apr5g1871 270 PANTHER 50S RIBOSOMAL PROTEIN L3 49 269 IPR019927 GO:0003735|GO:0005840|GO:0006412
Apr5g1871 270 Gene3D - 87 145 - -
Apr5g1871 270 TIGRFAM L3_bact: 50S ribosomal protein uL3 56 257 IPR019927 GO:0003735|GO:0005840|GO:0006412
Apr5g1871 270 MobiDBLite consensus disorder prediction 183 222 - -
Apr5g1871 270 SUPERFAMILY Translation proteins 55 266 IPR009000 -
Apr5g1871 270 Gene3D Translation factors 182 262 - -
Apr5g1871 270 ProSitePatterns Ribosomal protein L3 signature. 156 179 IPR019926 -
Apr5g1871 270 Hamap 50S ribosomal protein L3 [rplC]. 54 261 IPR019927 GO:0003735|GO:0005840|GO:0006412
Apr5g1871 270 PANTHER 50S RIBOSOMAL PROTEIN L3-1, CHLOROPLASTIC 49 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr5g1871 Apr-Chr5 21787049 21788330 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr5g1871 K02906 - gmx:100802392 440.654